RNA id: XM_043258300.1


Basic Information

Item Value
RNA id XM_043258300.1
length 3538
RNA type mRNA
GC content 0.42
exon number 14
gene id abcg4b
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13363504 ~ 13373446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACAGCGCTTCTCTCACCTGCCCAAACGCACTACTGTGGACCTGGAGTTCAGCGACCTGTCCTACACCATCAGAGAAGGGCCGTGGTGGAAGAAACAAGTCATGCAGTGCCTGGCCTGAAGAGAGCAGATGTTTCTTTACTCTTGTGATTTATTGGTGAAAGCGTACCCGTGTGGAAGTTCCACTCTTTGACAGCCTTCATATGCCaacatgacttttatttttgcagtgccGTCACTACAAGTAGTTTAAATTAGATGAGATCACATCTGACATCAGTGGGAAGAACAAAATTTTCAATGCTTGTGCTTTATGCTGACTACATTTATGCACTATGATGACCAGATACAGAATGGAATATAGTTGTAAATAcgataaatgcatttgtaaaagtGATGAATGTAATCGGCACTCCTATGTTTCCACTGTTTCTTTCCATTGTGGCCTAAAGGAAAAGTACCACCAATGATGATAATATAGTGGTCATTAAATGACTTCTAAACATTCGGTGGACATGTATGGGAATAAAGTCAGGGTAAAGGAGAGGGCTTTTCTGTGATCTGACTGTGAGAACAGAAATTTTGGGCTGATAGGCTGATAATTAGGGCGCCTTGCTTTGAAATACCATAagtcagactttttttttttttaagaaatactaTATCAGCGACTcctaaaaatgtcataattttttttaatgagatctTTCGGTCTTATGTGGTGGGTAAAAGCCATTGTGGTGGACTCATAGAAAGTTCAATGAGCAGACTTGTCCAGAATGGTTTAATTAGCCACTGTACTTAAAGGTTTTGGAGCCCAATTCTTTCATCACCTTTATCACTCGCTTTCTCACATTTTTAAGCTTTGGAGAATTATGTAGTACAGTCATGAGGTTCACGGATTAAACCATACTTCTTATTTGAAGGGATTAACTGAGAGTGGACCGCTTGTTCCAAAGGAGAACCGTATGATGCCAAGCATATATTTTGTCGTTCTTCCAGGTTATAAGGCCTTACTCAAGTGTCTATCAGGGAAGTTTTGCAGTCGGGAGCTCATTGGCATTATGGGCCCCTCTGGAGCTGGGAAATCCACGTTGATGAACATCCTGGCGGGATACAGGGAAACAGGGATGACTGGACAGATCCTGGTAAATGGAAAGCTCAGAGACCCCCGAACCTTTCGTAAAATGTCCTGTTACATTATGCAGGAGGACAAATTGCTGCCCCACTTGACTGTTCAAGAAGCAATGATGGTATCAGCCAACCTGAAGCTCAATGAAGACACAGAGGTGAAAAAAGAGCTGATAAAAGAGATTCTGACGGCCCTGGGACTGCATGAGTGTGTCCACACTCGAACTGTGTGTCTCTCTGGGGGTCAGTGTAAGCGTCTGGCTATTGCCCTCGAGCTAGTAAACAACCCCCCAGTCATGTTTTTTGATGAGCCCACCAGtggtTTGGATAGCGCGTCCTGTTTCCAGGTAGTGTCATTGATGAAGTCTCTGGCACAAGGAGGGCGAACTATCATTTGCACTATTCACCAGCCCAGTGCCAAGCTCTTCGAGATGTTCGATAAGCTGTATATTTTAAGCCAAGGCCAATGCATATACAAAGGAAGCGTCCCATACCTCATCCCTTATTTGAGAGGACTGGGTCTTCACTGTCCCACATACCACAATCCTGCAGATTTCATCATTGAAGTAGCATCAGGAGAGTACGGGGACTTGAACCCAGTGTTGTTTGAAGCTGTTCAGGGTGGCATGTGTGCATTGGAGCAAAAGTGCAACTGTATCGACAAAACCACTGTAACCCCATGCACTGCAAAATGTGTCAAAGATTCAGGCCATGTTGAGAGCCATACTTTTGCAACAAGCTCTCTGACTCAGTTCTGCATTCTCTTCAAGAgaacatttattacaatatgcAGAGACCAGGTTTTGACACATCTGCGGCTAATGTCACACATCTCCATTGGAGTACTGATAGGCCTGCTGTACCTCAATATTGGCAATGACGCCAGCAAAGTCTTCAACAACACTGGATTCCTCTTCTTCTCAATGCTCTTTCTCATGTTTGGAGCACTGATGCCTACAGTTCTTACCTTTCCCCTAGAGATGGCTGTGTTTCTCAGGGAACATCTAAACTACTGGTACAGCTTGAAGGCGTACTATCTGGCTAAGACAATGGCTGACATTCCATTCCAGGTCCTTTGTCCCATCATGTACTGCAGTATTGTGTACTGGATGACTGAACAGCCTCCAGAGGCAAGCCGCTACTTGCTGTTTTTGGCTTTGTCGATCTGTACGGCTTTAGTAGCCCAGTCTCTTGGACTTCTAGTCGGTGCTGCCTCCACATCCCTTCAGGTGGCCACTTTTGTCGGTCCGGTTACAGCCATTCCGGTGCTACTATTCTCTGGGTTCTTTGTGAACTTTGACACCATTCCAGAATACCTACAGTGGAGTTCCTATGTGTCTTATGTTCGGTATGGGTTTGAGGGGGTGATTTTGTCCATTTATGGGATGAATCGAACCGAGCTTGAATGTCCAGGGAGGGTTTGCAAGTTCCAGAGACCTGAAGAAGTACTGCAGTTGTTAGATGTAGAAGATGCCAAGCTTTACATGGACTTCATCGTATTGGGGATTTTCTTCCTCATCCTGCGACTTGCCACCTACTTGGTTCTTCGTTACAAAATAAAGTCAGAACGATAATATTCAAGTCGTAGCCTTGAATGGTCTGCAGCTCTCGTGGCCTGTTTTCAGGCTACACGTATACACTGTAATTTCCAAAGGTGTCATTATCTGCTCAGGAAGGTCAGATCTATTTGTTGATCATTTTCGTGTTCTggtttttgtatttcatttggaatgAAGTCATTAAATGTCATTGTCTACAGAAttggcttttaaaaatgttataaatattataatgtttttcagtgttaaatTGACGCAGTACCTGGTGTTGGAAAAAATGGTGTTATGCAAGGCTGCTATATCCAAATTCAAGATGTCATAccaaatttaaatatgcaaatgataatTTACTGATCTTTCTCTGTTCGTTATGGCAGTTCTCACACTCAGTTAACTCTGGCTTTAAACCTACACTAGCGTTGAttcgttcgtttttttttactctgagcTAATTAGaatgaagggtttttttttttttttgcatttccagTTTCATAAAGCACACGTGAACATGTTTAGCCTAAGATAAGGATGTTTACATATCATTGCACAAGTCCGAAAGGAGTTTTAATTCAAACCAGAAGACTGTGAAGGTTCACACAGTGCCTGCGTTTCTATTAAACCATTGTATCAGTCTTTTTGTATAGCAgattttattagttttctttcttttatgattatttagtattttcacTTGTATTTACTTGGTgctaaaatgtgtgtattaaaaCAAAGTTATACTTTTTTAGACCAACAAACTTTCATACTATGTATATCAGCAATGTATTGCCTGAACATGTCATACTGCCAAATGTACCTAtgtgtttagaaataaaaatatgaaatcca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05680 ABCG4; ATP-binding cassette, subfamily G (WHITE), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157252 lncRNA downstream 418131 12945087 ~ 12945373 (-) True G106442
TU156916 lncRNA downstream 523107 12838764 ~ 12840397 (-) True G106211
TU156875 lncRNA downstream 622430 12738051 ~ 12741074 (-) True G106184
TU156805 lncRNA downstream 691056 12672187 ~ 12672448 (-) True G106137
TU156746 lncRNA downstream 764931 12598286 ~ 12598573 (-) True G106099
TU157380 lncRNA upstream 234595 13606184 ~ 13606897 (-) True G106525
TU157402 lncRNA upstream 295982 13667571 ~ 13669225 (-) False G106541
TU157403 lncRNA upstream 295982 13667571 ~ 13669225 (-) False G106541
TU157404 lncRNA upstream 295982 13667571 ~ 13669225 (-) False G106541
TU157405 lncRNA upstream 295982 13667571 ~ 13669225 (-) False G106541
XM_043259613.1 mRNA downstream 650 13354101 ~ 13362854 (-) False nlrx1
XM_043259612.1 mRNA downstream 651 13354101 ~ 13362853 (-) True nlrx1
XM_043259614.1 mRNA downstream 9542 13347060 ~ 13353962 (-) True pdzd3a
XM_043259611.1 mRNA downstream 20501 13332487 ~ 13343003 (-) True ube4a
XM_043258585.1 mRNA downstream 32480 13300482 ~ 13331024 (-) True kmt2a
XM_043259784.1 mRNA upstream 3373 13374962 ~ 13379579 (-) True hmbsb
XM_043259783.1 mRNA upstream 3373 13374962 ~ 13379264 (-) False hmbsb
XM_043258303.1 mRNA upstream 23472 13395061 ~ 13398947 (-) True si:dkey-182i3.11
XM_043258275.1 mRNA upstream 65086 13436675 ~ 13439813 (-) True ckmb
XM_043259824.1 mRNA upstream 82893 13454482 ~ 13461103 (-) True ercc2
TU156053 other downstream 1857327 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 2005956 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 2031606 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 2058942 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 2270791 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 84392 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 375447 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 506996 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 512331 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 548480 13920069 ~ 13925707 (-) False cluha

Expression Profile