RNA id: XM_043221786.1


Basic Information

Item Value
RNA id XM_043221786.1
length 3060
RNA type mRNA
GC content 0.47
exon number 16
gene id mtmr1b
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14534881 ~ 14547812 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTTTGTAGATATTTATTAGCGCTGGCGTGGCGGTGTGGGAGGCGAGTTTACGGGATCcagcattaatattcatgagcggAGAACTTGCTATTGGAAACTGTCGACGCaacgtaattaatattcagaaGGAAACCGCCTCCATTGGAAGCTTAAGCATTGCacatctaattaatattcatgagcgaTTCCCTTCGACGTAGTAGGAATTCAGATGTAAGGCGACGCGAGTCAAAGTTTCTGAGGAAAGCGTCCGCTGATCCAGACACGCGACGAGCGTCGGAAATGCAACATAACGTTATCTTGCGCTTCTGTAAGCCGACATAGATAATGGATAAGCGACCGACCTCAGCACAGTCAAACGCTGAAACTCCAGACAGTCCCACAGGGGCTCATGTTGAATGGTGCAAACAACTGATCGCGGCCACAATGTCAAGTCAGATCTCTGGACCCATCAGCTCAGAGATGATTTCCAGAGAGTACAAGGACTGTGATGTGGAGGTTACGGGATTTCTGTTGGACAGTGACCCTCAGCAGACTGCCCCCTCTTCGGCACTCAGAGAAGGAAATAAGCAGGCTCAGATGGAAGAGGCTCCGCGTGTTCCTGGAGAAACCATTAAAGCTATTGtcaaaGATGTCATGTATATTTGTCCGTTCTCTGGGGTTGTGAGGGGGACTTTAACCATCACTGACTACAAGCTCTTCTTTAAAAGCCTGATGCGGGATCCTCCGTTTGTGCTGGATGTGAATCTCGGAGCCATTAGCAGACTGGAGTCTATCGCCGTTCAGAGTCACGGAGACAACACTCAAGGACTTGAGATAGTTTGCAAGGACTTGAGAAACCCCCGGTTTGCGTACAAGAAGGAGGGACAGAGCAATTTGGAGGTGTTTGAAACCCTGTCAAAGTACACGTTCCCTCTCTCCCACAGCCTGCCTCTCTTTGCCTTTAAGTACCGGGAGACGTTTCCAGAAGATGGCTGGAAGATCTACGACCCGGTCTCTGAGTATAAGAGGCAGGGTCTTCCAAACGAGAGCTGGATCATCAGTAAAGTCAACAGCAGTTATGAGCTGTGCGAGACGTATCCGGCTCTGCTGGTCCTGCCTTCGAATGTCACCGAGGACGAAATGAAGAGAGTGGCGGCCTTTAGGGCCAAACGCCGTTTCCCAGTGCTGTCCTGGATTCACCCCGAGAGTCAGGCCGCTATAGTGCGCTGCGGTCAGCCTCAGGTGGGTCCATCAGACCGCCGCTGCAGGGAGGATGAGCGATACCTGCAGACCATCCTCGACGCCAACGCCCAGTCTCACAAACTCTGCATCTTTGATGCTCGCCAAAGCACTGTAGCTGACACTAACAAAGCCAAAGACGGAGGATATGAGAACGAGAGTTTCTATATCAACGTGGAGCTGAACTTTCTGGAGATCCCCAACATACATGTGATGAGAGAATCCCTGAGGAAGCTCAAGGAGGTGGTGTATCCTGCCATCGACCAACAGCGCTGGTTCTCCTCTGTGGACTCCACGCACTGGCTGGAATACATCAGGCTCTTGCTAGCCGGTGCGGTACGTATCGCGGACCGGATCGAGTCTGGAAAGACGTCAGTGGTGGTGCACTGCAGCGACGGCTGGGACCGCACTGCTCAGCTCACCTCTCTGGCCATGCTCATGCTGGACGCCCACTACCGCTCGCTCAGGGGCTTCCAGGTGCTTCTGGAGAAGGAGTGGCTGAGCTTCGGACACCGCTTCACCTCGCGAGTGGGACACGGAGATGGGAATCACGCCAACTCTGAGCGCTCCCCTCTCTTTGTGCAGTTCATCGACTGCGTCTGGCAAATGACCCGGCAGTTTCCCTCTGCATTTGAATTCAATGAGCTGTTTCTCATCACGGTGCTCGATCACCTGTACAGCTGCCTGTTCGGGACGTTTCTTTACAACAGCGAGCAAGAACGAATCTCGAAGGAGGTGTACAGCAAGACCGTGTCTCTGTGGTCATACGTGAACAGCCAGCTTGAGGAGTTTACCAACCCTCTGTATGTGAACTACGAGCACCATGTATTATATCCAGTAGCCAGTTTGAGACATCTTGAGCTTTGGGTCAGTTATTATGTGCGCTGGAACCCTCGAATGAGACCACAGGTTCCTGTTCATCAGAGTCTGAAGGACTTGTTGGTTCTGAAGTCAGAGCTGCAGAAGAGAGTGGATGAGCTAAAACGAGATGCAGCTTCATCACATTCTGTCTCCTCTTCCTCAGAGCATGAAGGCATGCCCATGCAGACAACTGTCTGAGCATATCTTATTCATCTGGTAAATACTGGTGTCAAAAAACATATATGTTCCGTCATAAAAGCACTGGCCAAATCACAAAGCACTGCAGCGGGGGTCACCAAGTTTGGTCCTGGAGAGTTTAGCTCCGgtcctaatcaaacacacctgaagcagctaatcaagttCTTACTAGGTATACTTTAAACTCCCAGGCACGGCAGAGTTTTCTGTGCATAACTTTGTGAAAGCTATAATATATTATTGGGAACGATCTATTAAGAACTGTTCTTTTGGAGGTTGATTTTAACAACAGGGCTTTATCGAGAGCTGAGAATAATGAAAAGCCTATTCCAAGAAATCGTGTTAACAACAGTAGAATTCTCTCTACAGAAAATGCCTGAATATTCCAGTGGCTTTGGCAAAAATGTTCTTGCTCTTATATTGCATACTAATTACTCCTTAAGAATAGGtgaaatgtaacaatttataaTCGTTGCGAAATGTAAAATTTGTGCATAGCTTAGCTCCGTGGTAGTGAGTGACGTACGTGTACAAAAACCGCCAccaccttttattattttaaaagcgtTTCAGTATTACAGTGGCGGTTTACTAAAATTTGTCTAATGCGTGTATATGTTATtttctgaatgtgtttgtaattccttttttaaatgtgttttatagtaattttgtaataaatttaaaatttctcttaagcttaaatttgtaatatttatgcatcgtaatatgcttaaaactacattttgttttgtaaggAATAAAACTATATATCTTA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216558 lncRNA downstream 91990 14441999 ~ 14442891 (-) True G146622
TU216443 lncRNA downstream 362082 14169728 ~ 14172799 (-) True LOC122326149
XR_006247420.1 lncRNA upstream 323526 14871248 ~ 14873810 (-) True LOC122326073
TU216733 lncRNA upstream 323535 14871257 ~ 14873599 (-) False LOC122326073
TU216762 lncRNA upstream 405489 14953211 ~ 15001740 (-) True G146753
TU216818 lncRNA upstream 620954 15168676 ~ 15168913 (-) True G146803
TU216843 lncRNA upstream 712186 15259908 ~ 15260460 (-) True G146822
XM_043221936.1 mRNA downstream 533 14530919 ~ 14534348 (-) True hmgb3b
XM_043222001.1 mRNA downstream 12859 14491129 ~ 14522022 (-) True LOC122326828
XM_043222002.1 mRNA downstream 12861 14491129 ~ 14522020 (-) False LOC122326828
XM_043221647.1 mRNA downstream 212724 14279563 ~ 14322157 (-) True chm
XM_043220701.1 mRNA downstream 259934 14266631 ~ 14274947 (-) True LOC122326026
XM_043221795.1 mRNA upstream 351 14548073 ~ 14549593 (-) True zgc:110222
XM_043221780.1 mRNA upstream 1976 14549698 ~ 14569608 (-) False map4k6
XM_043221783.1 mRNA upstream 1976 14549698 ~ 14569607 (-) False map4k6
XM_043221779.1 mRNA upstream 1976 14549698 ~ 14569607 (-) True map4k6
XM_043221782.1 mRNA upstream 1976 14549698 ~ 14569606 (-) False map4k6
TU216464 other downstream 271214 14259685 ~ 14263667 (-) True G146556
XR_006247436.1 other downstream 307615 14223143 ~ 14227266 (-) False srsf1b
TU216432 other downstream 312208 14218611 ~ 14222673 (-) False dynll2b
TU216130 other downstream 667268 13866415 ~ 13867613 (-) True LOC122326201
XR_006247558.1 other downstream 1089674 13445078 ~ 13445207 (-) True LOC122327025
TU216757 other upstream 368256 14915978 ~ 14920398 (-) False stc2b
TU217094 other upstream 1606642 16154364 ~ 16160995 (-) True G146999
TU217095 other upstream 1606642 16154364 ~ 16162231 (-) False G146999
TU217241 other upstream 1756135 16303857 ~ 16304711 (-) False LOC122326033
TU217243 other upstream 1791505 16339227 ~ 16339716 (-) True G147087

Expression Profile