RNA id: XM_043230825.1


Basic Information

Item Value
RNA id XM_043230825.1
length 3075
RNA type mRNA
GC content 0.51
exon number 17
gene id txnrd3
representative True

Chromosome Information

Item Value
chromosome id NW_025047901.1
NCBI id JAEQBD010000246.1
chromosome length 542128
location 107692 ~ 120424 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGGCGGAGCGTCATTCAGCGGCGGCCGCGAGATGAAGTCGCAATAATGGCAGAAGGGATTTTAGTTGCATTTTACGTGTTAAGTTAATGTCACGTCATGAGTTCCTGTTGATATCAAGTCTGACTTTAATCGTAGCCATCGACTCAGGAAGCGGAAGAGCGCGGGATATCGATCCGTGATCGGTTATTGATCGTCATGCCGCCCATCGAGAATAACGCGGGTCGCGAGCAGATCCGATCGAAGATCAAAGAGCTGATCGATGCTAATCAAGTGCTGGTGTTCAGTAAGAGCTTCTGTCCCTAGTGCGTCCGGGTGAAGGAACTCTTTAAAGAGCTGAATGTCACGTGTAACGCCGTAGAGCTGGACTTGATGGAGGACGGAACCAACTACCAGGACCTGCTGCATGAGATGACGGGGCAGAAAACCGTTCCCAACGTCTTCATCAACAAGAAGCACATCGGAGGCTGTGACAACACCATGAAGGCACACAAAGATGGCGTCCTGCAGAAGCTGCTGGGTGAAGGCAGTGAGGTGTACGACTATGATCTCATTGTGATTGGCGGAGGTTCTGGAGGTCTGGCCTGCTCAAAGGAAGCGGCAGCCTTGGGGAAGAAGGTCATGGTTCTTGATTATGTTGTTCCTACACCGACGGGCACAACCTGGGGTCTGGGTGGCACGTGTGTAAACGTGGGCTGTATTCCTAAGAAACTGATGCATCAAACAGCTCTGCTGAGCACAGCCATGAAAGACGCTCGTGCGTTCGGCTGGGAGTTCTCTGATCAGGTGACTCACAACTGGGAAACGATGAAGACGGCGGTAAAGAACTACATCGGTTCGCTGAACTGGGGCTACAGAGTGTCCCTACGAGACAAAAACGTCAATTACGTCAACTCCTACGCTGAGTTTGTGGAGCCGCACAAGATCAAGGCCACCAACAAGCGTGGAAAAGAGATGTTCTACACTGCAGCTAAGTTCGTCCTGGCGACAGGAGAGAGGCCTCGTTATCTGGGCATCCCAGGAGACAAAGAGTACTGCATCACCAGTGACGACCTGTTCTCATTGCCCTACTGTCCCGGGAAGACTCTGGTCGTCGGAGCGTCGTACGTGGCTCTGGAGTGCGGGGGGTTTCTGGCCGGTTTGGGGCTGGATGTGACCGTCATGGTTCGCTCCATTCTTCTGCGAGGATTCGATCAGGACATGGCCGACCGTGCAGGAGAGTACATGACGAATCACGGGGTCAAATTCCTCAGGAAGTTTGTTCCTACCAAGATCGAGCAGCTGGAAGCTGGGACTCCAGGCCGAATTAAAGTAACGGCCAAGTCGACGGAGAGTGACGAAGTCATCGAAGGAGAATACAATACTGTGCTCATCGCTGTGGGTCGAGACGCCTGTACAGGAAAGATCGGTCTGGACAAGGCTGGAGTCGAAGTCAATGCCAAGACCGGGAAGGTCCCGGTGAACGATGAGGAGCAGACCAACGTTCCTCACATCTATGCCATCGGGGACATCCTGGAGGGGAAGTGGGAGCTCACTCCGGTGGCCATTCAGGCCGGGAAGCTTCTGGCTCGCCGACTGTTCGCCGGAGCGACTCTGAAGTGCGATTATGTGAACGTTCCCACCACCGTCTTCACTCCTATGGAATACGGCAGCTGTGGTTACCCAGAGGAGAAGGCCGTGGAGATCTACGGTCAGGAGAACATCGagATCTATCACAGTCTGTTCTGGCCCCTGGAGTTCACCGTTCCCAACCGGGACAGCAACACGTGCTACGCCAAGATCCTCTGCAATAAACTTGACAACGAGCGCGTGATTGGCTTCCACTATCTGGGTCCTAACGCCGGAGAGGTCACTCAGGGCTTCGGAGCCGCCATGAAGTGTGGGATCACCAAAGATCAGCTGGACAACACCATCGGGATTCACCCGACCTGTGCTGAGATCTTCACCACCATGGAGGTCACCAAGAGCTCCGGCAGAGACATCGCTCAGGCCGGCTGCTGAGCTTAAACCCTGCTCGTTTAACAGGCTGTCAGGACTAGATTAAACCAGTGAACCGTCCCTCTCCTCTCGGTGTAAACGCACTCGAATTAACCTCAGGTCATCAAAACTCGTCAGAAGTCTGCTCTCGAGAGGCTTTTGTGTCTCGTTGTTCCCGTATTGTGGGCGGAGCCTGGAGGAGCAATAAGACACGACGGCCCGCGAGAGGCGGGGCTTCGCTCGCCTAGAGACCAATGACTGGGAGAGGAGATGATGATTGACAGCCTGTTAGACAGCGGGGTTACTCTGCTTTAACTGATTGTCCGAGTCAGAAATGCACCGGATGTGTCCGTGCTTCacgctttttctttctttcacctTCTAAACGCACGCTAGCGCGTTCGGTGCTCTGTGACGTCGTAACCCTTAACCCCACGTTCAGTGGCGGGTTACGACCGATGTTTTCTGCACTCGGACTTTAAATAGATAAACTCCCGTAAGGAGAACGCTGATCTCTGGCCTCCAGACTCACGAGGGCCGCatgctttcatttcttgtgcTTGTAGGAgtctatttttctatatttaatggTGGTTTGTCCTCGGTTGCTCGTCATTCCTGTCGGGGTCGTGCTAAGACGGATTCCCGCTCTCGTTATTTTCTGATTCAGCCGTCGAGTAACTGAGACGCGATCGAAGCGCAAACCAAATGCAGCATGTAGATGCTTCCTCCAAGTATTTAAACTAACGGGCATCGCTGAGATCTCGTTTCTAGTTTGTGATGCCTGTCAGAGCACTtagaaatatcaataaaatgtgtatgttcatatttttataaatatatcactGGATTACATTTTCATGTATCTGTACGGAGGTTTCATTCAGATATAAAAACACgtctgtttgtatttgtttgctgtttatttgcttCGGGgttatttttatgtctttcGTCTCATCATTCACTCCCTTTCGGGTTTAAGGGGCAAAGTTCTTGTGTTTTACTGTCACTCAGCTCCTAACGAATGTACCATATTTCCATTAGTATCTCTGTTCAAATTCTATTCATGAACTTTTAATAAACCCATGTACACAA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004791 thioredoxin-disulfide reductase activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K22182 TXNRD; thioredoxin reductase (NADPH)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265411 lncRNA upstream 16375 42797 ~ 91317 (+) True G178908
XR_006248610.1 lncRNA upstream 62874 42549 ~ 44818 (+) True LOC122333275
XR_006248612.1 lncRNA upstream 66816 20681 ~ 40876 (+) True LOC122333283
TU265409 lncRNA upstream 66827 35824 ~ 40865 (+) False LOC122333283
TU265408 lncRNA upstream 66827 36537 ~ 40865 (+) False LOC122333283
TU265451 lncRNA downstream 22778 143202 ~ 143941 (+) True G178938
TU265463 lncRNA downstream 47719 168143 ~ 168360 (+) True G178946
TU265464 lncRNA downstream 49378 169802 ~ 171562 (+) True G178947
TU265465 lncRNA downstream 52916 173340 ~ 173646 (+) True G178948
TU265477 lncRNA downstream 73858 194282 ~ 194540 (+) True G178956
XM_043230833.1 mRNA upstream 16370 84959 ~ 91322 (+) False LOC122333289
XM_043230830.1 mRNA downstream 2509 122933 ~ 127552 (+) True ntan1
XM_043230824.1 mRNA downstream 7959 128383 ~ 134035 (+) False orc4
XM_043230823.1 mRNA downstream 7960 128384 ~ 134035 (+) True orc4
XM_043230831.1 mRNA downstream 64160 184584 ~ 187502 (+) True LOC122333286
XM_043230832.1 mRNA downstream 64160 184584 ~ 187502 (+) False LOC122333286

Expression Profile