RNA id: XM_043247098.1


Basic Information

Item Value
RNA id XM_043247098.1
length 2602
RNA type mRNA
GC content 0.50
exon number 12
gene id abtb1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3726570 ~ 3737104 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCTGTTTACGTTCGCCGAGCGCTTCCACAGTGCGAGAAGAAACAGCAGACGTCGCGAACTGCACCTGGAAACAGGCTCCGCGTTAGTTTTGTTCAGAGCCGTCGCTGTCCGTGCGTCTGCAGCCGATCCTGTCTGTTAGGCAGGCCGTTTCAATGCATTTCAGAGAAGCTTTACCGCCGCGCAGATGGACGCTGTTGATCTGTTTTCAAGCTGCAGAAAGGGCGACATTGCCAGAGTGAGatacCTGGTTGAACAGAGGGACGTAGAACTGAACATCAGAGATAAGTGGGACAGCACACCTCTGTATTATGCATGTCTCTGCGGACATGAAGAGCTGGTGCAGTACTTGCTTGCCAACGGAGCAAAGTGTGAGGCGAACACGTTTGACGGCGAGCGCTGTCTGTACGGAGCGCTGAGCGACCCCATCCGCCGCCTGCTTAAAGAGTACAAGCGCATCACGGCCAAGGCCATGCAGAGGGACTATTACGACCAGTTCCTGCAGACGCTTTTGGAGCAGGGAAACTACGGCGACGTGACGTTTATGGTGCACGGCGAGATGTTTAAGGCGCACCGCTGCATCTTGAGCGCCAGATCTGAGTACTTCGCTCACATGCTGGAGACCAAGTGGAGGGGGAAGGCTGACATCCCCCTCAAACATCCACTGGTCAACCCTGCTGCGTTTGGCGCGATCATGCAGTATTTCTACACTGGCCGTTTGGATATAGATGTGAATTACGTGGAGGACTGCAAGCGTTTGGCCAAACAGTGTAAGATCAGCGAGCTGATCGAGGAGCTGGAAGTGAAGTGCAAACAGGTTTATGAGTTCGTGTCTAACAAGCCCGGGACGTGCGTGAAGGTGCTGACTCTGGACCCTCATGACTTTCAGCTGCAGGACGGAATGGCTCTGCTGGCCGACAGCGCACTTCCTGCTGAGCTGCGGGTTGGATACGGTCAGCTCCCGTTCGATCTGACTGATAGTTTTCCCAGTTACCCTGACATCTGCTTCCGGGTGGAGGGCTATGACTTCCTGTGTCATAAGGCGTTTTTCTGTGGCCGTAGCGATTATTTTAAGGCGCTGTTGGAGGATCATTTCAGCGAGGGTGAAACTCTGCAGACTCATCCCAGTATTCCTGTCATCACCCTTCATGACGTGTCTCACGATCTGTTTACAAGAAtcctttattacatttacagcgATAACACTCagCTCTCTCATGAGAACGTGTATGAGGTTCTGTGCGTGGCTGACATGTACCTGTTACCGGGTCTGAAGCGTCTGTGCGGCAGGACTCTGGCTGTGCTGCTGAATGAGGAGAACGTGCTGCACATGTGGAAGACGGCCAAACTCTTCCGGCTGTCGCGCCTGGAGGACCAGTGCACGGAGTACATGGCCAAGATCATAGAGAGGCTGGTGGAAAGGCCGGAGTTTGCTGACATGATCAGAGAGGATGCTGGGAACGTGGCTGCCAGGCAGGAAACCGACTCCATCCCTCTGGTAGACGAGATCCGTTTCCACATCGCCAGTAACGTTCAGACGTACAGCGCCATCGAGGAGGCGAACCAGAAGCTCAGCGCCCTGGAGCTCCTGCTGGCCAGCATCGGGCTGGAGTGCTGAGAAGCACGAGCCGCCGGATCCGTCCGATGCTTCGCGCGCACAAATAACCCGTAGCAAACTAGCACCACGTATATGGTCAATTCTAACCAAAAACAAGCGTATGTAGAGTCATTGTGCGTCGCGCTGCAGTGGCCTGCTGTGATGCGGTCAAGCTTCCTGTCTTCAGTTGTTTtcgttgtgtttttttaatgagcgAGAAGAGAGACGAAAGCTTGACGTTCTGGTTATTTCACCGGTAGTGAGCCTTATATATCAGAACAAGTTCTTGACGTTTGCACATACGCCGTTCGCTCTTCCACGTGCGTCGCGACCGATGTAGCGGAATATTTAACAAGCTTCATAGGAGACCCCGAAACGTTGCGGACTATGCTGTTACGATTTGAGCCAACGATTAAATGTAGGGTGAGGACgatttattgaaatgcatttaagaGAAGGAGTGCATCGAAAAATAATCTCTTTTTGAGATGTTAACGTTTTAGGTTAATCCCTTTTTGATCCAAGGATGAATTCTGAAAGGCGTTGGTGTGATAGTTTGCCATTTGTTTAACCAAACAGGTGATTATTTATGCCTTGCGACGCGTGCTCACTTAGAAATGTATCTTCCGGCACTGATAGAGAAGTTTTCCAGCTTTGCATCCACAGACTTCTGGTAATACGCATGCAATATTTGCATAAAGTCACTCAGTCAGGATACGTCCTAAAGCACTTAATATTTCTCCAGCTATATTTTCTTTCTGCATCgctttgattttatttggtagccttttatttattgtattttacgTCGGTCTTAAAGCATATCCCGTGCTTATTTGCTCAGCGGCacttgtttatgtttgtttctgAACATCCCGCATCTGAGACCTGTGCGTGGACTTTGACGTCCGTTTACTAGCTGATTTTCTTTCCTATGATTCATCGTGGGACGCTCCGACTGAATGGGATGTACATAcatgagcaaaaataaatattatttaatgta

Function

GO: NA

KEGG:

id description
K10520 ABTB1, BPOZ; ankyrin repeat and BTB/POZ domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89876 lncRNA upstream 70638 3654761 ~ 3655932 (+) True G60743
XR_006251656.1 lncRNA upstream 118593 3607315 ~ 3607977 (+) True LOC122350949
XR_006251655.1 lncRNA upstream 118593 3607315 ~ 3607977 (+) False LOC122350949
TU89854 lncRNA upstream 146588 3579502 ~ 3579982 (+) True G60728
TU89844 lncRNA upstream 156286 3569494 ~ 3570284 (+) True G60718
TU89925 lncRNA downstream 87798 3824902 ~ 3826416 (+) True G60782
TU89958 lncRNA downstream 147778 3884882 ~ 3885873 (+) True G60803
TU90082 lncRNA downstream 170608 3907712 ~ 3908800 (+) True G60870
TU90154 lncRNA downstream 403505 4140609 ~ 4215206 (+) True G60895
TU90322 lncRNA downstream 564568 4301672 ~ 4342107 (+) True G61007
XM_043247097.1 mRNA upstream 15535 3704865 ~ 3711035 (+) True gpd1a
XM_043247091.1 mRNA upstream 22846 3681533 ~ 3703724 (+) True asic1a
XM_043247089.1 mRNA upstream 74503 3648002 ~ 3652067 (+) True nefmb
XM_043247345.1 mRNA upstream 150020 3575531 ~ 3576550 (+) True LOC122350663
XM_043247890.1 mRNA upstream 157653 3555598 ~ 3568917 (+) True vsig8b
XM_043246378.1 mRNA downstream 6381 3743485 ~ 3765088 (+) True slc6a6a
XM_043247795.1 mRNA downstream 63174 3800278 ~ 3807847 (+) False LOC122350989
XM_043247794.1 mRNA downstream 63275 3800379 ~ 3807847 (+) False LOC122350989
XM_043247796.1 mRNA downstream 63624 3800728 ~ 3807847 (+) True LOC122350989
XM_043246183.1 mRNA downstream 91405 3828509 ~ 3834154 (+) True LOC122350007
TU89218 other upstream 1686734 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 1690590 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 1693507 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 1709050 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1808199 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 111510 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 187757 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 311515 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 1367466 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 1367466 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile