RNA id: TU89844


Basic Information

Item Value
RNA id TU89844
length 791
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G60718
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3569494 ~ 3570284 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAGGTTAATTATCCATTTGAGAAGGAAacgattttatattataatgaaaagtacactttttttactaaactgtgacaaaaaaagaattttttgtaacatttggGTGATTGGGACAGCAAATATTGTTGATTTAGGttagttaatatttattgcaaaagttcataatttaatatttaatattttatgcagaTATTACTGGGACATTGTTATTGGggtgttataatattttttcataattaaggctacttgtttatttctgttcattataactaacttttataaaacaaatttcattaaacacattttattctcTCCATCAAATTTtactaaacatttaattgtCTTTCAAATTTCATTGAACATTTAAATCTCACcctcaattttaattaaaagcattttattttctcccCCAAATTTCATTGAACATTTAATGCTCACTCTCAGATTtcaattaacacatttatttttctccattAACTTTTATTGAACATTTCATTCTCAACCCCAAAGGCCCTTTTTGTCCCCCTTGAAGACTTGACTTCTAACAGCCATTGCAAAATTAACAATTCAAAAAAATCAGGtccaaattttattaaaaactattcatttatttgcctTTAACCGTTGTCCCAATCACCCAAAATCATATTGGATTATTTTTGCCCCGCCCACTTACATGATGTCACACCAATGAGAACATGCAAATTTGATTatgtagaaaaacattttaccttATGTCCCAATCACTGTTTATTCAGTTTATGTTTaagctatttaaaaagaaaataa

Function

GO:

id name namespace
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89788 lncRNA upstream 483121 3085756 ~ 3086373 (+) True G60673
TU89782 lncRNA upstream 488771 3076876 ~ 3080723 (+) True G60668
TU89775 lncRNA upstream 511648 3056299 ~ 3057846 (+) True G60661
TU89774 lncRNA upstream 513475 3055427 ~ 3056019 (+) True G60660
XR_006251539.1 lncRNA upstream 568512 2998907 ~ 3000982 (+) True LOC122349907
TU89854 lncRNA downstream 9218 3579502 ~ 3579982 (+) True G60728
XR_006251656.1 lncRNA downstream 37031 3607315 ~ 3607977 (+) True LOC122350949
XR_006251655.1 lncRNA downstream 37031 3607315 ~ 3607977 (+) False LOC122350949
TU89876 lncRNA downstream 84477 3654761 ~ 3655932 (+) True G60743
TU89925 lncRNA downstream 254618 3824902 ~ 3826416 (+) True G60782
XM_043247890.1 mRNA upstream 577 3555598 ~ 3568917 (+) True vsig8b
XM_043247953.1 mRNA upstream 43550 3497424 ~ 3525944 (+) True lrrtm4l2
XM_043247952.1 mRNA upstream 43550 3497424 ~ 3525944 (+) False lrrtm4l2
XM_043247559.1 mRNA upstream 535595 3015349 ~ 3033899 (+) True adra1aa
XM_043246714.1 mRNA upstream 616810 2948990 ~ 2952684 (+) True gatd3l
XM_043247345.1 mRNA downstream 5247 3575531 ~ 3576550 (+) True LOC122350663
XM_043247089.1 mRNA downstream 77718 3648002 ~ 3652067 (+) True nefmb
XM_043247091.1 mRNA downstream 111249 3681533 ~ 3703724 (+) True asic1a
XM_043247097.1 mRNA downstream 134581 3704865 ~ 3711035 (+) True gpd1a
XM_043247098.1 mRNA downstream 156286 3726570 ~ 3737104 (+) True abtb1
TU89218 other upstream 1529658 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 1533514 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 1536431 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 1551974 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1651123 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 278330 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 354577 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 478335 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 1534286 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 1534286 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile