RNA id: XM_007250389.3


Basic Information

Item Value
RNA id XM_007250389.3
length 1505
RNA type mRNA
GC content 0.42
exon number 4
gene id alg14
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15160215 ~ 15216508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACAGTGACAGTGAGCTCAGATTGTAcaaaaaaagcttaaataatCAGGGAAAAACTaatgaaaacagtgtaaaaaaaaagagagagtttaGCGCATGCGCAGAGCCGCCAAGTAACACCAATCGATGGGTAGcgcaactcgacagaacaccagtcaAACCAGCTAACGTGATTTTGATAGGCTAggactagttttttttttacctattgagcagctaatattttattgtgtgtatCGTGTGAAATACACAGTACGTTTATTTGTATTACTGGGAGCTGAGTGTCTGTACAGGAGCATGTTTGAGCTGAAAATGCTGAGGTTTATAGGCTTAGTTTACTAGCTACCTAGCGTTAGCTACACTTtctgctaagctaactaacaagTTTTACCTGTCTAAAGTTGTCTGTGTGTAATGCTGCGGTTTCTGTATTACTCTGCATTCAACCATTCCTGTTACTGCTATGTTAAATTTCGTATGTAACAGCTGGGCTagttattaatttaatgtttaccACTGCTTTGCTTCCAGATAGCTAACTAACCAGTTTACTACACAgtgttatgttttaatataaacagctgtcagtctgcagcatgtggttttcaGTGATGTGCGGGGTTTTCTGCGGGGTTCTCCTGGTGTTTATTATTCTCGTTATCCGTTTATACGCGGTTCTGCGGGGAGCTAGAGACTGCAGACCTGGAGTAAAGGGCTCAGTGTGTGTTCTGGTCGTGGCTGGATCAGGAGGACACACGACAGAGATCATCCGTTTGATGGGAAGTTTATCCCAAGCCTACAGCCCCAGACATTATGTGATAGCAGACACTGACAAGATGAGTGAAGATAAGATCCGCACATTTGAAGCGTCGAAAGTGGAAGGAGACAGTCTGGGACAGTTCACCATTCATTGGATCCCTCGGAGTCGAGAGGTTCGTCAGTCGTGGAGCTCCTCTGTTCTCAGTACTCTGAATGCCCTGCTTTACTCCATTCCTCTGGTCTTCAGACTCAAACCTGATGTGGTGCTGTGTAATGGTCCCGGGACATGCATACCTCTGTGTGTTGCTGGACTGCTCTTAGGGATCCTGGGACTAAAGAGGGTCTTGTTGGTCTATGTGGAAAGCATCTGCCGTGTGGAAAGTCTTTCTTTGTCTGGCAAAATCCTTTACCACCTTTCTGACTACTTCTTTGTGCAGTGGCAGCCTCTGCAGACCAAATATCCTAAATCTATCTACATGGGGAGAATTGTATGAGTGAAATTTGAATGGAGATAGTGTTCTTTCTACATTATCACTAATTGAACACTGACATTCATTCGGAAATAGACTTCTCAATATATGTATGTTTCCTATTATGATCTATGAAATAGCTCAAGCTGCCTTTTGTTACATTGAGACAAGCGACAGTTGTATATCTATTTTGTCAGAAAGTTCTCTTCATTCCTGTGTGGTTGCTCAGGTACGATTGAACGTGCTGTTGAATAAACGGTTCTGTGTTGTAACCTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122429 lncRNA upstream 79757 15121858 ~ 15123493 (+) True G91036
TU122395 lncRNA upstream 100119 15102372 ~ 15103131 (+) True G91009
TU122375 lncRNA upstream 183846 15018886 ~ 15019404 (+) True G90996
TU122373 lncRNA upstream 195279 15007020 ~ 15007971 (+) True G90994
TU122329 lncRNA upstream 235005 14965859 ~ 14968245 (+) True G90952
XR_002650441.1 lncRNA downstream 6943 15223135 ~ 15224692 (+) True LOC111193336
TU122477 lncRNA downstream 22194 15238386 ~ 15239432 (+) True G91075
TU122482 lncRNA downstream 72399 15288591 ~ 15288942 (+) True G91080
TU122488 lncRNA downstream 112916 15329108 ~ 15329399 (+) True G91083
TU122489 lncRNA downstream 113251 15329443 ~ 15330156 (+) True G91084
XM_022673638.1 mRNA upstream 48232 15145358 ~ 15155018 (+) True LOC103022978
XM_007250384.3 mRNA upstream 48232 15145734 ~ 15155018 (+) False LOC103022978
XM_007250386.3 mRNA upstream 58945 15130223 ~ 15144305 (+) True abcd3
XM_007250385.3 mRNA upstream 58945 15130228 ~ 15144305 (+) False abcd3
XM_022673635.1 mRNA upstream 108287 15076348 ~ 15094963 (+) True LOC103045456
XM_007250390.3 mRNA downstream 6631 15222823 ~ 15234815 (+) True cnn3
XM_022673639.1 mRNA downstream 6648 15222840 ~ 15234815 (+) False cnn3
XM_007250391.3 mRNA downstream 32609 15248801 ~ 15274896 (+) True LOC103024964
XM_022673640.1 mRNA downstream 33016 15249208 ~ 15274896 (+) False LOC103024964
XM_022673641.1 mRNA downstream 59950 15276142 ~ 15283049 (+) True LOC103025288
TU122125 other upstream 928552 14272064 ~ 14274698 (+) False eif1b
TU121747 other upstream 2255000 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 3046388 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 3064612 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 4296078 10904644 ~ 10907172 (+) False LOC111193328
TU122479 other downstream 60061 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 65317 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 1179022 16395214 ~ 16419380 (+) False trim71
TU123306 other downstream 2695709 17911901 ~ 17912443 (+) True G91678
LOC111193302 other downstream 3131832 18348024 ~ 18350624 (+) True LOC111193302

Expression Profile