RNA id: XM_022673640.1


Basic Information

Item Value
RNA id XM_022673640.1
length 4532
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC103024964
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15248801 ~ 15274896 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTAGTACCTACGTCTTTATATCGCGCTAAAGCTTTCTTTACATGCTGTGGGAAATGCGACAACAGCTGCTGGCCTAAAGGACCCTCAACACGTTGTGGGCTCGGGTGGCCATGGACACCTTCACCCAGCTAATCCTGCTCATCGCTGTGGTgagtttcttcttcttccagtGGCTCTTTCACACTGTGAGTCCCTGGGTGTCGTCCAGGATCAGCCCTGGCTTTCTGAAACTCGGCCACAAACAGCAGATTGAGTGGAACTCCAGAACGGTGTCCACACTCCATGCGATACTGGTCGGACTCTTCTGCCTCTACATCCTTTTCTTCGATGAGGCTGTCAATCAGGACCCTGTGTGGGGAGATCCTACACTGGTGAAGATAAACGTGGGAATAACAACAGGCTACCTCATATCTGatCTGCTGCTCATATTTTACTATTGGAGGGCGATAGGGGACAAGTTTTTTGTAATTCATCACCTGGCAGCATTGTATGCTTACTACTATGTACTGGGCCAAGGAATGTTGCCTTATTTTGCTAACTTCCGCCTACTTGCAGAATTTTCCACCCCATGTGTAAACCAGCGCTGGTTCTTTGAAGTGTTAGGTTACCCTAGAACCTCCAGGCCCAACCTTGCCAACGGGGTCCTGATGGCGGCCGTGTTTTTCATGGTGCGGATCGCCGTCATGCCTGTTTACTATAGCCGTATGTACTCTGTCATTGGCACGGAGGCCTTCTACCGGGTCCCCTTCGGCGGCCGCAGTGCCTGGATCTTCTCCAGCATCTGCTTGGACATTATGAACGTCATGTGGATGCACAAGATCGCTCGCGGCTGCTACAAGGTCTTGCAGTCCAGCCGACAGCTCAAAGCCCAGACTCAGGAGAACGGAAAAACTGACTAAGCATGACGAAACATTTGCTCTCTGCAGCGGGGGGAATTCTAGGAAGTCTCTTTCCTTCTCAGTGCACTctgatgtttcttttttatgattatttatttcttttttcttttttttatccctgCTGACAGTTTGTGAGTCAGTCAGCCAGCAGAAGCGTGCTGCTGCCACCGGACATTTGGACTATTTCTCTtcttatctgtctctctatctatgTCTCTGTCTCTATCCTTTGGAGGCCAAGCAGGGAAATGAAGCTGGACATCATGTGACTGCACAGGAGAATGAATGACCCCAGAGCAATACTTACTTATATAGTAAAtggccaacatttttttttaagcaggttTCTCTCTGTAGCAGGAGCACTGATGTCACATTGAGCTGAGCACTGCTGGTAAAGACAGAGAGGTCGGGACCCAATGCTGTTGGAGCTGCACAGCAGCTGAAGCattgggacttttattttgattttattgatttattctatatttttattttttggaaagcCTGAGGCTTTGATCTAAACTTTGTTTAGTCCTTGGTAAAAACAAACTATAGACTCTCTGggacaaaaagaacacaaaaacgACATGTGCCACATGCTTCTGATTTATTTCTCAAAATCACTGCCCCCACCTTGGTTAAATCTCCGTCCACTGACTGAGAGAGACTCTTTCCTCTCACCTGCACTGCACTACAGCGGGACTCGTTCAGATCACAGGCCGGGCCTGAACACCACCCCAGATGCCGCGTACGTGCCGAAAGAGGTTAAGGACAATTAACTGTGAACCTGCACGCACATTTTAAATTTACACAGAGTATTTTATACGTGAGATTGTAGTTGATCAAGAAGAGAAGTGCACTTTGCTGGTGTGCTGGAGGACACACTGAAGATTTATTGCAGCCAACGAAAAACCACGTCAAAAAAAGGGACATTTCTGCAATGTTTGTTGAGTAGCCAAGATGTTTTCACCTCAGATTTGATTTGTACGTGTTAATTGTAATTGGAAGGGAATCGGACATGTTCTCACTCCACTCTGCCATGATTACAAGACAGGTCTTGGTTTTTAGAGTGGGATTAGGAAGCAGTTTACACAAACccacacagtctcacacacacacacacaccacacacacacacacacacacacacacacacacacaaacatgcacatacAAACTCACATTTGCAAGTCTTTCCACAACACAGCTTCATCTGTGTCCTCTTTGTACAGTCGATAAGTGCATGCTGCAGTGTGGTTCTCTGAATGTTTGCATTGTAGATAGAAATGTTATTGGACATGCTCAAAATACTcatttgaattaattttatGTACAGTGTATCGAGTCAATATAGAACATAAATGCTTTTGGAAAAGGGGGTTAAAACAGGATGTCCAGGGTGTTTCGCTTAGGGATAGGTACATTTGTCCTGtacccacacacagacacacacgcacacacacacacagaaaaaaagcagGGACTGGGAACTTTTTCCTGCATCATACCGTATTTATTTGAACCAGTCCAGTCCAGTACTGGGTCAGCATGTACCTGCATATTTATTCTTTTGAACTGAAATGTATGAAATGTACGGATAAACAGTGCTTGTTTATCTACATAGAcgtatacagatatacagaagCAAGAAGGACATATATTAcaatcagtttaaactgcatcATGTGTCACTTTGTAAGACATTTTAGAATAGAATGTTTGTACTATGCGCACTCTTGCATTTAAAGGCAACTCGCCTTCACTGATAACTGAAGTAGAGGATGCTACACGTTGTTGTCGGTTTCGTTATTGGGAAAGAGTATTTATTATGTGTGGATGTATGAGTAGGACCATGTGAGATTTCCGGGAATTGTttgctcttttaaaaaaattgccagaatttctatttttaaacaaatgtacTACTTGAATCCTTGCTATACCTTGTTGCGAAAGGCAGGCACAGAAATTTGAATTCTTTTAATTACGGTACGTGCAAGATGATTCCAGCCGTAATGTTTTGCCTTCACGTGTTGTGCAGAATTTTGTTCCAGATGCCTTTTCTAGAAATGTTTCTTTAAGATTTTTACCACTTTCCATCCGTGTAAGATTATCATGTCTGTTTGAATGCATTATGTTTGCATGTCTTTGTTCCTTGCTTTTGTAACTGACTTGCCATAGGCCGAACGTTGACCCTGAAAGAttgcctttttatttttgtttgttttgtttgtggttTTGTTGAAAACTGCATATTACACCAGCATAAGGCAAGTCTTAACTTTGATTTTAAAGCCTCACCAAATTACCACAGGTTGGTCTTTTCCTTCTGATTAGAAACACAACATGTTGGTAGCATTATAGAACGGACATCTAATTATGttcttttcactttaatttcttCATGTTCATTTATAATGAGCTTAGCAAGAGTTGAGTTGTTTTAAAGTTCAATTGAAGTCCATGGCCAAATTTCACGATCCACTATAATTGCTTAAGCTGTGTTCCAAAAGTCTAGGCTGCAGGCGAGATGTGACGACTCTCTCAGTTGCCTATTGGTCACACGTATGGAATAGTCTAACAAGGCTTTGTGGTGACATCACCAGAAAAAACTCTGGAACTTATTGTTTTCTGCCCTTTTTGATCAATGTTCATGTAGCTATTTTTTCCCTTGCATTGTATATGCACATGTAATTGCAGGTAACCGAGGGACAGGGAAAGGATTCATCAGTTGCATCCTTAAAATCGCAACAAACGTTGGCTGcattttctttaaacaaaagGCTTCTTTAAAAGAAGGCTCCTTCAATTTGTAACAGTGTTCTATGCTGTAGCAGCCGAGAAATGTAGCCCAAGCTTTGGAACACAGCTATAGTGTACACACAATGGATTTTATCAGTATGATGATAATCCATCACATTGTTTGGTTTGGCCGAGCAGTGAGCTCACACGTGCAGCAAGGTGTCTAAAATCATTCACTACCATGTTAAATTCTATTTTCTATAATAGTGCTGCTTTATATCGTGATCTGTATTTTCATGTGTAGGGATTATGGTGGATATGGAACAGTTTCAGACACAGCTCTCTTCTTGAGGTGACTTTACGTGAGTGAGTCTTTAATTACTCTGAGAGTTACCCACATCCCTAAGTCATTTAAAAATGGTAGAAATGGATTGTAACTTTATTTTCATGCTCTGGAAATATTACTGGTAAATTCTGGACATTTATATACTTCTGGATGCTTGAAAGGAAGTGCAAGAACTCAATGGAAAAACACCTTTAAGCATGTTTATCTGTGTAGACCTGGCTAATGATGCTGTTCTGCAGTCCTATAGAGTGAATGGCCTCACCATGTCAGGTGTCGGGTGTGTCCGGCTACCTCTGGATCACATTTCTCTCATGTTCACTCCTCTTCTCTTCATATTTCACAAAAGAAGTTTTCAAATATTAACCAAAGCATGTAGATGGGGTTTAAtgttcacacactcacagatcAGGAATTTATGAAGAAGGACCAGGAATTTTATTTATGAGcgtcaaatgtatttattttttaaatcttcacATCTGTCTTAATTTTTTCTGTCATGATGCCATCTGCCTCAATAAAGCAATACATTCATATTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122477 lncRNA upstream 9776 15238386 ~ 15239432 (+) True G91075
XR_002650441.1 lncRNA upstream 24516 15223135 ~ 15224692 (+) True LOC111193336
TU122429 lncRNA upstream 125715 15121858 ~ 15123493 (+) True G91036
TU122395 lncRNA upstream 146077 15102372 ~ 15103131 (+) True G91009
TU122375 lncRNA upstream 229804 15018886 ~ 15019404 (+) True G90996
TU122482 lncRNA downstream 13695 15288591 ~ 15288942 (+) True G91080
TU122488 lncRNA downstream 54212 15329108 ~ 15329399 (+) True G91083
TU122489 lncRNA downstream 54547 15329443 ~ 15330156 (+) True G91084
TU122490 lncRNA downstream 55699 15330595 ~ 15331220 (+) True G91085
TU122491 lncRNA downstream 60922 15335818 ~ 15336053 (+) True G91086
XM_007250390.3 mRNA upstream 14393 15222823 ~ 15234815 (+) True cnn3
XM_022673639.1 mRNA upstream 14393 15222840 ~ 15234815 (+) False cnn3
XM_007250389.3 mRNA upstream 33016 15203250 ~ 15216192 (+) False alg14
XM_022673638.1 mRNA upstream 94190 15145358 ~ 15155018 (+) True LOC103022978
XM_022673641.1 mRNA downstream 1246 15276142 ~ 15283049 (+) True LOC103025288
XM_022673642.1 mRNA downstream 193397 15468293 ~ 15481792 (+) False LOC103025597
XM_015606115.2 mRNA downstream 193457 15468353 ~ 15482803 (+) True LOC103025597
XM_007250394.3 mRNA downstream 193458 15468354 ~ 15481792 (+) False LOC103025597
XM_007250403.3 mRNA downstream 538415 15813311 ~ 15840883 (+) True snx7
TU122457 other upstream 32700 15160215 ~ 15216508 (+) True alg14
TU122125 other upstream 974510 14272064 ~ 14274698 (+) False eif1b
TU121747 other upstream 2300958 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 3092346 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 3110570 12135574 ~ 12138638 (+) False LOC103025787
TU122479 other downstream 1357 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 6613 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 1120318 16395214 ~ 16419380 (+) False trim71
TU123306 other downstream 2637005 17911901 ~ 17912443 (+) True G91678
LOC111193302 other downstream 3073128 18348024 ~ 18350624 (+) True LOC111193302

Expression Profile