RNA id: TU122429


Basic Information

Item Value
RNA id TU122429
length 1512
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G91036
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15121858 ~ 15123493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggtctTTCTTGAAAATACAAAAcgaaaacacaaaataacattacaaaacattatttaaccAAGGTGACATaggcaatatatatatgaataagtaaaaagacaacaaaaattCAATCAATAATGGTGCAACCTTGAGGTAACAAGCAATAAGTTCCTTTTCAGGTTCTTAACCAAACAACTCATAAGTTACTATGTCCTCAGTAGTGTTATCAAATATTCTTGTGTTATAAATTGACTACATAAAACAGTTTTACATTTCAAAATGTATTAGGTTAGCAATGACTTCACTGTCACTCTTTCCGTCAGACCTTTAACCAAAAAAAGGAGgcgggagggaaaaaaaaaacagcaataagttGGCATGCTCTTGTCACCAATACAAGGGGTTGTTCGGCAGctcaaccaaccaaacaatatatacatacacacgcacacacgcacacaaacacacacaggcaaatATGTGCAACAAGTATTTGTAACAAGAGCATGAGGAATGGTAAATTCATAAGAACAGAACTGAATATCTGTATTTGAGGCACTAAATCAAAATATACCCGACCCCACCTTCAAATACAAAGTGGCAGATGAGCAACAACATGTGTTACTTACATAGATACACATTAATtactcataaaaaaataaaatccaagttaaaaccaaataaatgtaaaaactttaaaacactgttgacttttttttatggaaaacacaatttatattttctatgaaataacaataaagacaTTGCATTTGAGATGTGAAGTTGCTGTTTTCACCTTAATCCTTTGGATTTTGCTTCCAATAACCATTTGATGATTTTGCATCACGGCAGGTAGATtcagctagcattattattattcaatataTACATGCATTCAATTGAACATGGATTCCAAATACAAACTAATTCcacctcttttcttttcttacaaCTTTAAGAGTTAAATGCTATAAAAACTGCAAGACAGTCCACAAAACACAAGTCTGCGTGAAGAGCAAGTCTTCAGATATGAGATATGCTGTAGAACACATGAGTAATGCTAACAAATGTAGTCGGAATGGAAAGATTCTCGTTCCCATTCCACAATTTTCTTTCTTCTGCCAACTAGgttcagattcacattatgctTGGAAGGAAGAACAACAGGCTGGAAACACATGTGGCATCAGCCCCAACCGTAACTGTAAAATACTGAACTGTGCGAATGCATATCTATCATCTTCTGACAGTGCCATCTGTTCACCACTGAGGGGGCACATAGCTGTAGGTGGGTGTGCCAGGGGGTCGATACGTGGGCACTGTGACAGGATGGGGAGCTACTGGAGTTGGGGAGTGAGTTGTTAATAAAGTCCCTATGGAGCAAAATGACAATTTATAATATTACCATGTagcacaaacaaacaagcataaACATCAGAGCTTAGTTATATGaagcagatgttttttttttaaataaaagccaCCAAATAATGATTCTGCAGCGAACAACCAAACACAAATATGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122395 lncRNA upstream 18727 15102372 ~ 15103131 (+) True G91009
TU122375 lncRNA upstream 102454 15018886 ~ 15019404 (+) True G90996
TU122373 lncRNA upstream 113887 15007020 ~ 15007971 (+) True G90994
TU122329 lncRNA upstream 153613 14965859 ~ 14968245 (+) True G90952
TU122323 lncRNA upstream 205832 14914063 ~ 14916026 (+) True G90946
XR_002650441.1 lncRNA downstream 99642 15223135 ~ 15224692 (+) True LOC111193336
TU122477 lncRNA downstream 114893 15238386 ~ 15239432 (+) True G91075
TU122482 lncRNA downstream 165098 15288591 ~ 15288942 (+) True G91080
TU122488 lncRNA downstream 205615 15329108 ~ 15329399 (+) True G91083
TU122489 lncRNA downstream 205950 15329443 ~ 15330156 (+) True G91084
XM_022673635.1 mRNA upstream 26895 15076348 ~ 15094963 (+) True LOC103045456
XM_015606111.2 mRNA upstream 45876 15066092 ~ 15075982 (+) True LOC103021625
XM_007250375.3 mRNA upstream 160132 14872891 ~ 14961726 (+) True LOC103046458
XM_007250373.3 mRNA upstream 376933 14734892 ~ 14744925 (+) False steap2
XM_007250386.3 mRNA downstream 6730 15130223 ~ 15144305 (+) True abcd3
XM_007250385.3 mRNA downstream 6735 15130228 ~ 15144305 (+) False abcd3
XM_022673638.1 mRNA downstream 21865 15145358 ~ 15155018 (+) True LOC103022978
XM_007250384.3 mRNA downstream 22241 15145734 ~ 15155018 (+) False LOC103022978
XM_007250389.3 mRNA downstream 79757 15203250 ~ 15216192 (+) False alg14
TU122125 other upstream 847160 14272064 ~ 14274698 (+) False eif1b
TU121747 other upstream 2173608 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 2964996 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 2983220 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 4214686 10904644 ~ 10907172 (+) False LOC111193328
TU122457 other downstream 36722 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 152760 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 158016 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 1271721 16395214 ~ 16419380 (+) False trim71
TU123306 other downstream 2788408 17911901 ~ 17912443 (+) True G91678

Expression Profile