RNA id: XM_007250384.3


Basic Information

Item Value
RNA id XM_007250384.3
length 2449
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC103022978
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15145358 ~ 15155018 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttctaaaccatATACAACTTCCTCCTCtaagacaaaaagaaagtgaCTGTCGTATCATGACAGTTCACTTCTGCAGCGCTCTTATTATCTATTTTCAGATTGTTGCCATTCCTGTACATAGATCTTCCATCTTGAGACGCACCATGACCTGGCTGATGGTTCCACTGCTCCTGCTCATGCTTCAGATGATCTGCACACCATCTCAAGCTCAGGAACAAAGCTCTCTGCGCTTTGTTGCCATTGGAGACTGGGGCGGCCTTCCTACAGCTCCCTTCTACACACTGCAGGAGATGAAAATAGCTAAAGAACTAGGAAGCGTGGCTGAAAGCCAGGGCCTGGACTTTGTCCTCAGCTTGGGAGATCATTTCTACTACAGTGGCGTCACGGACGTAAAGGATACTCGCTTCAAGactacGTTTGAGAATGTGTTTTCTCATCCAGCTCTGGATCCTGTACCTTGGTATTTGGTAGCAGGAAATCATGATCACCGGGGAAATGTGTCTGCTCAGATTGCTTACTCAGCCCTGTCTAAGAGGTGGCATTACCCTGATCCCTACTACCAGCTGCAGTTCAAGATTCCTCACACCAATGTCTCGATGACGGTGCTGATGATTGACACAGTGGTTCTTTGTGGAAACACTTATGATGAACTCCAACCGCAAGGCCCAGAGGACCCCTCTGCTGCTGACCGTCAGCTGGAGTGGATTGAGAAGATGCTTCAAAGCACCAAGTCAGACTTTGTGCTTGTGGCCGGACACTACCCTGTCTGGTCGATTGGTCACCATGGTCCAACTCGCTGTCTGGTGAAGCAGCTGAGGCCCCTGCTAAAGAAATATAATGTCACTTTATTTATGAGTGGTCATGACCACAGCTTGCAGTTTATTCGGGAGGAAGACGGGAGCCCATACGTGGTCAGCGGAAGTGGGAATTTCCTGGACATGTCCACTGTTCACTCAAAGACATTCCCAGCATCTTGGCAACTGTTTTCCAGTGCTATGAATCACACTGCAGGAGGCTTTGTGTATTTTGAAGTTACAGAGAGTAAGATGTTTATAAATTACATTCAGTTAGATGGTAAGTGTGTTTATCAGGCCACTCTGCCTAAACGGAGTTTATGATACACTGATGGAGACCAGTAGGCTAGGTAAGATTGAAATGTTTTCTCATGTTAAAGAGAAACTTATTTCTCAATCCTTTTTTCCACATAAAATTAGAAAGATTACATAATTATTTTCTCGGCTATTTATCTATAATGATTAAATTCTATCTGTGTAAGTTAATTGATTTAttaagttaaaatgtttttaatgactgCATCTTCATTTTCTGAAGTGGCTGTGAAGGCCTatggaaaacaaaaatacaactttTACATTGTGATGTGATGCATTATCATGCTTtaagtaataatttaaaaatgggAGAATTGTGACCATGAAGGGATACAATTATGACGTGGCATAATGTGATAATTTATTGTTAATAACTAGATCTAATGATGCTCAGAAACATTCCTCACACCTTAAAAACACCTTGACAAGTCTGGACTGTTTACATAAAGCAGGCTGGTTCaagaattcatgcttttattgCCAATTCCTGACTCTAGCATCTGTGCGCCATTTGATAAATCAAGATTAATCAGACTAGGCTATATTTTTCCAGTTTTCAACTGTCCGGGGTATACCCACTGCAGCCttagctttctgttcttggacTTAACTTGGTATTCTGCTGTAGTATTTGTCAAGATATTAGTGTTTAGAATTAAGTAAGAAAATATTGCCTGAATCTGCAGAAAGGTGGAACTAAGTCTATccaaaaatagatatttttataGAATAGAACTGACACAAATTAAGGAACTGTTTCAGACTTCTCTGCCATCATATATGTTAATAGAGACAGTTGTGTtcagttttatacattttatgtcCTATGTGTCtttgtatttcagtgttttcagaCACTTCCACTACAGACAGACGGGGGcgatattgcaatatttatgaTTTGTCTCAAGCTTTTGTGATGTTTTATATGATTTAGGAAGCAGGACAAGCATAAGGATAAACatccatgcacaaatataacatacacacataaacaagcACACACCCAAATGAATATACACaatttatttgaaaaagtaaCGATCAGACAACTTTTGTACCATTTCCACAGATTCacatgtataaaaaaagtaatgaagTCATTTTGTTTTGTACTGTCTGTATCGTTATCATGATTAGTCATGGGTAATTCTTCTGTCCAGTTTCTTATCATACCATTTCAGTCTTTATCTTACTGAAAATTATACATCTATTTCTATACAACTGTAGAACCATAAATAcgattttaaaaactaatatacagatatttctttataaaagctaaaaaaataaattagtgcCTTGGCAAAATAAACATCTGTTATCCAAAAA

Function

GO:

id name namespace
GO:0009612 response to mechanical stimulus biological_process
GO:0003993 acid phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122429 lncRNA upstream 22241 15121858 ~ 15123493 (+) True G91036
TU122395 lncRNA upstream 42603 15102372 ~ 15103131 (+) True G91009
TU122375 lncRNA upstream 126330 15018886 ~ 15019404 (+) True G90996
TU122373 lncRNA upstream 137763 15007020 ~ 15007971 (+) True G90994
TU122329 lncRNA upstream 177489 14965859 ~ 14968245 (+) True G90952
XR_002650441.1 lncRNA downstream 68117 15223135 ~ 15224692 (+) True LOC111193336
TU122477 lncRNA downstream 83368 15238386 ~ 15239432 (+) True G91075
TU122482 lncRNA downstream 133573 15288591 ~ 15288942 (+) True G91080
TU122488 lncRNA downstream 174090 15329108 ~ 15329399 (+) True G91083
TU122489 lncRNA downstream 174425 15329443 ~ 15330156 (+) True G91084
XM_007250386.3 mRNA upstream 1429 15130223 ~ 15144305 (+) True abcd3
XM_007250385.3 mRNA upstream 1429 15130228 ~ 15144305 (+) False abcd3
XM_022673635.1 mRNA upstream 50771 15076348 ~ 15094963 (+) True LOC103045456
XM_015606111.2 mRNA upstream 69752 15066092 ~ 15075982 (+) True LOC103021625
XM_007250375.3 mRNA upstream 184008 14872891 ~ 14961726 (+) True LOC103046458
XM_007250389.3 mRNA downstream 48232 15203250 ~ 15216192 (+) False alg14
XM_007250390.3 mRNA downstream 67805 15222823 ~ 15234815 (+) True cnn3
XM_022673639.1 mRNA downstream 67822 15222840 ~ 15234815 (+) False cnn3
XM_007250391.3 mRNA downstream 93783 15248801 ~ 15274896 (+) True LOC103024964
XM_022673640.1 mRNA downstream 94190 15249208 ~ 15274896 (+) False LOC103024964
TU122125 other upstream 871036 14272064 ~ 14274698 (+) False eif1b
TU121747 other upstream 2197484 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 2988872 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 3007096 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 4238562 10904644 ~ 10907172 (+) False LOC111193328
TU122457 other downstream 5197 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 121235 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 126491 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 1240196 16395214 ~ 16419380 (+) False trim71
TU123306 other downstream 2756883 17911901 ~ 17912443 (+) True G91678

Expression Profile