RNA id: XM_022673632.1


Basic Information

Item Value
RNA id XM_022673632.1
length 1597
RNA type mRNA
GC content 0.53
exon number 6
gene id steap2
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14734892 ~ 14893717 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCCGCTCCGTGTTTCAGCAGCAAgagcagcggcggcggcggagCGGCGTctctgtggagagagagagcagctgcGTCTGAGCGGATCCGCGCGGCGCTAAtgacagTTTCTAGGAAACAAGATCAGGAGCTGCGGACCTGAAAATGGACTCCATTTCCTTGATGGGCGGAAGCCCTGCTGCCACCAAAGCTTCCTTCTTACCCAACGGACTGAAGAATGGACCCAGGGAAGGAGCCTGCAAgcccaccatcaccatcatcggCTCCGGAGACTTCTCCAAGTGTTTGGCAATTCGTCTCCTCCGCAGCGGCTTTCACGTAGTGGTGGGCAGTCGCCAGCCCAAGCGTGCTGCCGAGTTCTTTCCCCATGTGGTGGATGTGACCCACCATGAAGATGCGGTTGGAAAGGCCTCCATGGTTTTCCTGGCGATTCACAGAGAACACTACTCTTCTCTCTGGGACATTAAGCACCTGCTCGCTGGAAAGGTGTTGATAGATGTCAGTAACAACAGGAGGTTGAATCAGTACCCAGAATCCAATGCAGAGTACCTCGCTTCCCTTTTTCCGGAGTCCATTGTGGTCAAAGCGTTTAATGTCATCTCGGCTTGGGCTATGCAGTCAGGCCCCAAAGACGCCAGTCGGCAGGTGTAtgtctgcagtaactctgtggaGGCGAGGCAGCAGGTCATTGAGATGGCCAGGCATCTCAGTTTCATCCCAGTGGACATGGGTACTCTGTCCTCGGCCAAGGAGATTGAGAATATGCCGTTACGCCTGTTCTCAGACTGGAAAGGTCCCGTTCTGACCGCAGTCGCCCTGTCCATCTTCTTCTTCGCCTACTCTTTTGTTCGGGACATCATCCACCCCTACATGAAGAACAGGCAAAGCTTCTTCTATAAGATCCCTCTGGAGATGGTCAACAGGACACTGCCTGTAGTGGCTATTACCCTGCTGGCGCTGGTGTATTTAGCAGGGCAGCTCGCTGCTGCACTCCAGCTTTTGTACGGGACTAAGTATAGACGCTTCCCCCACTGGCTGGAGGGCTGGTTGCAAAGCAGAAAGCAGCTGGGCCTGCTGAGCTTCTTCTTCGCCTGCGTGCATGTGCTCTACAGCCTCTGCCTGCCTATGAGAAGATCTGAGAGATATCTGCTGCTCAACATGGCCTACCAGCAGGTCCATGCTAACATTGAGAACTCGTGGAACGAGGAGGAGGTGTGGAGAGTGGAGATGTACGTGTCTTTTGGAATAATGAGTCTTGGACTTCTCTCCCTCTTGGCTGTTACCTCCATTCCGTCAGTACACAGCGCCCTGAACTGGAGGGAGTTCAGCTTTATCCAGGACCATCATAAAAATGCTTTCCCAACATTAGAGAACGGAATCGCAGTTCACTTTAAAGCtcaccaagactcacatttttTGGTGGATGACGGCCCTGTTGATTCTGCATACCTGAGCACTGATGGACTGTTTGCACCTGTTAAAATGGACCGAACTGAAGAACTAGTTTGACAGCTCCACCAAACAAGGCATGGCTCCAGCGGTATGGTTACCTCCCCCCCACAGACCCCAGAATGTCTGTCCTGCGTTCGGCGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122280 lncRNA upstream 34821 14662657 ~ 14700071 (+) True LOC103045856
TU122191 lncRNA upstream 82610 14646332 ~ 14652282 (+) True LOC103029466
TU122179 lncRNA upstream 220717 14513451 ~ 14514175 (+) True G90836
TU122160 lncRNA upstream 377198 14356600 ~ 14357694 (+) True G90818
TU122031 lncRNA upstream 512622 14221013 ~ 14222270 (+) True G90719
TU122323 lncRNA downstream 20346 14914063 ~ 14916026 (+) True G90946
TU122329 lncRNA downstream 72142 14965859 ~ 14968245 (+) True G90952
TU122373 lncRNA downstream 113303 15007020 ~ 15007971 (+) True G90994
TU122375 lncRNA downstream 125169 15018886 ~ 15019404 (+) True G90996
TU122395 lncRNA downstream 208655 15102372 ~ 15103131 (+) True G91009
XM_015606106.2 mRNA upstream 1315 14726988 ~ 14733577 (+) True LOC103045139
XM_007250372.3 mRNA upstream 35341 14693493 ~ 14699551 (+) False LOC103045856
XM_007243319.3 mRNA upstream 84664 14645798 ~ 14650228 (+) False LOC103029466
XM_007250370.3 mRNA upstream 95839 14590842 ~ 14639053 (+) True rsu1
XM_007250371.3 mRNA upstream 95839 14596493 ~ 14639053 (+) False rsu1
XM_015606111.2 mRNA downstream 172375 15066092 ~ 15075982 (+) True LOC103021625
XM_022673635.1 mRNA downstream 182631 15076348 ~ 15094963 (+) True LOC103045456
XM_007250386.3 mRNA downstream 236506 15130223 ~ 15144305 (+) True abcd3
XM_007250385.3 mRNA downstream 236511 15130228 ~ 15144305 (+) False abcd3
XM_022673638.1 mRNA downstream 251641 15145358 ~ 15155018 (+) True LOC103022978
TU122125 other upstream 460194 14272064 ~ 14274698 (+) False eif1b
TU121747 other upstream 1786642 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 2578030 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 2596254 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 3827720 10904644 ~ 10907172 (+) False LOC111193328
TU122457 other downstream 266498 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 382536 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 387792 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 1501497 16395214 ~ 16419380 (+) False trim71
TU123306 other downstream 3018184 17911901 ~ 17912443 (+) True G91678

Expression Profile