RNA id: XM_015606106.2


Basic Information

Item Value
RNA id XM_015606106.2
length 1526
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC103045139
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14726988 ~ 14733577 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTGCGCGCGTGGGGTGACACGCTCCTGAGAGGTCACCGTGTCCCTGACTGTAGGAGCTCCGGTTCGGTGTGGGGGTCTTCATGTGTGCtgtgtgcggtgtgtgtgtgcgcatgtgggGGTCTAGCGTTTTGACCGTTTGACTCAGAAGTGGAGCTGTGGGTTTGTGTGTCTCAGAATGGAGAGAGATACTCAGGATTTGGGGGATGTAAATGAGCACCATGAAGAGAGATTTCAACTTGGTGAAGTGGAATTGGCTGGCCTGCAGCTAACCCAAAAGGAACACGAGGAGGGAGAGACGCTGTCACGGTTGAGTCAGCGGCCTCTGCTGTCTGCTGCATTCGCTATGGAAGAGTCTGAGTTCCCTTCTAGTGTCTCTCTCCAAGATATGCCCCTCTTCCCCAAGTGGCAGCTTCCTCTCAAGCTCATGGCTGTTCTGATGCTTGTGGCGTTTGTCTATACGTTTCTCCGTGATGTGCTTCAGCcgtatatatatcacaataaaagTGACTTTTATAAGATACCCATCTTAGTGCTAAATAAAGTGCTGCCCTGGACCTCTATCACTCTGCTGGCCCTCGTCTATTTGCCTGGAGTACTGGCCTCACTGCTGCAGCTGCACAGAGGCACTAAGTACAGTCGTTTTCCTGTCTGTCTGGAAAACTGGATGAGTTTAAGGAAACAGTTGGGTCTGCTGGCATTCCTGTTGGCCTGTCTGCATGCCATTTACAGCCTGAGCTACCCAATGAGACGCTCGTACAGGTACAAGCTTCTCAACTGGGCCTATCAGCAGGTACAGCAGAAGAAGGAGGATGCCTGGATAGAGGATGATGTCTGGAGGATGGAAATTTACATCTCTCTAGGAATTCTAGGATTGGGCGTTCTGGCCTTGTTGGCCATCTCCTCACTCCCTTCAATTAGCGACACCCTAAACTGGAGAGAGTTCCAGTTTGTCCAGAGAACTCTGGGATACACAGCCCTGTTCCTGTGCACAGCCCACGCTCTGGTGTATGGCTGGAGAAAGTGGGTGGAGCAAAAGCAGTATGTGTGTTACACTCCTCCATCCTTCATCCTGGCCACCTTTCTCCCAGCGATGGTGTTACTGATGAAGACTGTGCTGGCTATGCCCTGTTTAAACAGAAGATTAGATCACATTCGGCATGGCTGGGAAAGACCAGGCTGCAAAGGACTGTCAGACAAAGATTCACTCTGACTTTATAAGACATTTACTATAATTATATATGGTAAAATTTAAGAGTGTATTAAGATGTGTACATATTGTTGAGCATTGTTAAAGAAATATGtactttattttgtatattaaatatttttacttgctTGTACCAGTCTGTTCAAATGCTGCTATGATTGTATGCTCTTATCTTTCGGATATCTCATATTGCTATGCAATAGTTCATAATCTGCTATTTTTATGACTGACCAGTGAACATTTTGTCTCCGTCATGATTACTACCTTCAGATGTTTTGGCAGAAATGGCAAGCCTGCCTTTTGTAAAAAGCTGCTTT

Function

GO: NA

KEGG:

id description
K14737 STEAP1; metalloreductase STEAP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122280 lncRNA upstream 26917 14662657 ~ 14700071 (+) True LOC103045856
TU122191 lncRNA upstream 74706 14646332 ~ 14652282 (+) True LOC103029466
TU122179 lncRNA upstream 212813 14513451 ~ 14514175 (+) True G90836
TU122160 lncRNA upstream 369294 14356600 ~ 14357694 (+) True G90818
TU122031 lncRNA upstream 504718 14221013 ~ 14222270 (+) True G90719
TU122318 lncRNA downstream 127765 14861342 ~ 14861709 (+) True G90941
TU122323 lncRNA downstream 180486 14914063 ~ 14916026 (+) True G90946
TU122329 lncRNA downstream 232282 14965859 ~ 14968245 (+) True G90952
TU122373 lncRNA downstream 273443 15007020 ~ 15007971 (+) True G90994
TU122375 lncRNA downstream 285309 15018886 ~ 15019404 (+) True G90996
XM_007250372.3 mRNA upstream 27437 14693493 ~ 14699551 (+) False LOC103045856
XM_007243319.3 mRNA upstream 76760 14645798 ~ 14650228 (+) False LOC103029466
XM_007250370.3 mRNA upstream 87935 14590842 ~ 14639053 (+) True rsu1
XM_007250371.3 mRNA upstream 87935 14596493 ~ 14639053 (+) False rsu1
XM_007250369.3 mRNA upstream 138860 14533600 ~ 14588128 (+) True cubn
XM_022673632.1 mRNA downstream 1315 14734892 ~ 14893717 (+) False steap2
XM_007250373.3 mRNA downstream 1315 14734892 ~ 14744925 (+) False steap2
XM_022673631.1 mRNA downstream 1460 14735037 ~ 14744925 (+) True steap2
XM_007250375.3 mRNA downstream 139314 14872891 ~ 14961726 (+) True LOC103046458
XM_015606111.2 mRNA downstream 332515 15066092 ~ 15075982 (+) True LOC103021625
TU122125 other upstream 452290 14272064 ~ 14274698 (+) False eif1b
TU121747 other upstream 1778738 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 2570126 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 2588350 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 3819816 10904644 ~ 10907172 (+) False LOC111193328
TU122457 other downstream 426638 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 542676 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 547932 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 1661637 16395214 ~ 16419380 (+) False trim71
TU123306 other downstream 3178324 17911901 ~ 17912443 (+) True G91678

Expression Profile