RNA id: XM_007243319.3


Basic Information

Item Value
RNA id XM_007243319.3
length 2072
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC103029466
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14645798 ~ 14652282 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCAGAAAAAGTTCagcaggagaaaaaaagaggaagagcgCGCGGCTGGGGCCCTGCCCAAACAGCCtcattaacattaacaacaAAGCAAATTggtggtcttttttttctttcttaaggGGACCCTCATCAACCAGCAAGATTTCGCCCAAAAGCAGGCAGGAGGAGCGCCCCGCGCTGACCAGGCTCGTGGGCAGGAGGCGGCTAATCGCGGCCGGGGTGCTCGGGGTGGTCAtggtgctgctgctggtcgTGCTCATCCCGGTGCTGGTCAGCTCCGCCGGCACGTCGGCGCACTACGAGATGCTGGGCACGTGCAGGATGGTGTGCGACCCCTACGGCACCAAGTCTCCCACCAGCACGGCCACGGCGGCGGACCCGGCGCGGGACGGCGGTCTCGTACAGTCGCTGCCCACCTTCATCCAGGGGCCCAAAGGAGAGCCCGGGCGACCCGGGAAGGCGGGGCCCCGGGGCCCACCCGGAGAACCGGGCCCACCCGGACCCGCCGGCCCGCCCGGAGAGAGGGGTGAACCGGGACGCCCCGGCTTACCCGGACCTCCGGGACCCAACGGCGCCGGAGCCATCAGCGCGGCCACCTACAGCACCGTGCCAAAGATCGCCTTTTACGCGGGACTGAAGAAGCAGCACGAGGGCTACGAGCTGCTCAAATTCGACGACGTGGTCACCAACCTGGGCAACCACTACGACCCCGCCACGGGCAAGTTCACCTGCTCCATCCCGGGGATCTATTTCTTCACCTACCATGTGCTGATGCGGGGCGGGGACGGAACCAGCATGTGGGCAGACCTGTGCAAAAACAACCAGGTTCGTGCGAGCGCCATCGCCCAGGATGCAGATCAGAACTACGACTACGCCAGTAACAGTGCGGTGCTGCACCTGGAGCCCGGGGACGAGGTCTATATCAAACTGGATGGAGGAAAAGCTCACGGgggaaacaacaacaaatacagCACCTTCTCTGGCTTTATCATCTACGCCGATTAGGACAACACAGCCCCTTCTCCACCACCCCTAGAACTGCTCCAACCcctgtcctcctcctccttccacTTGCCCCACCCACAACCCTCCAACCCCCACCTCCTTTTCCCTTTTATAACCCCACCAGTTTCtgaggcaagtgacacactcCCTCATCCGCGCCATTCTGGACCCCCAGAAGAAGTTGGTGAGGATGTGTGCGTGCGGGGGGCAGCGCGCGAGAAGGCCGCCCTCCCCCGTGTCCTCCAAGTCTCAATCCAGAACGAGCGAGATCCAGTGAAGTGTTTATTATGAAGGACAAGTGGAAGTGGAAGTGGAAGTCCAGCCAGCGAAAGGAATGAGAAAAGAGcaggacaaaaaaacaaaaaatcaacaggacaatgtgcatgcacacacacacatgcccgagcgtgcgtacacacacacaaaatattgctCAATGAATCAGTATTGCTCTCGCAGTCCCTCTGTGTCAATCACCAAAGCGGTTTCTGTCGTCTCTGTAGCTGTAAAGGAAGTCTAATCACCATAAGAGACTTTTGATAAATAACATGGAAATAGAGACAAGCCCAGTATGTGCAATAATGTTCATTACCACAAATGAACAAATGGTTATGAATATAATTCCAATACACGTTGCTTATCAAGCTTTTTCATCATCCCATCAGCTGCCAAAAGCTTGTGGAGTAGTCCATAGGTTGCGAATCATGTATGGTTCAAGTATCATAATCATATATCTCAAATAGCCCTGTTGAAATTAGTTAttgaaattattaattatatgcaCAGCAAGCCAGGAAAGTAATCAGAACACTTAACTGTAGAtattcagtatatatacagctctggaaaacaaaataagagaccacctcagtttctgaatcagttcctctgatgttgctatttataggtatatgtttaagtaaaattaacagggttgtctaatttgtaaagcacttttaaaGACTGTGTATTGCCTTGTATTGCCTTgccttgttttattctttaaactacggacaacatttctcccaaattacaaataaatatattctcatttagaaatatattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122179 lncRNA upstream 131623 14513451 ~ 14514175 (+) True G90836
TU122160 lncRNA upstream 288104 14356600 ~ 14357694 (+) True G90818
TU122031 lncRNA upstream 423528 14221013 ~ 14222270 (+) True G90719
TU121998 lncRNA upstream 456373 14186614 ~ 14189425 (+) True G90692
TU121974 lncRNA upstream 640350 14005234 ~ 14005448 (+) True G90678
TU122280 lncRNA downstream 12429 14662657 ~ 14700071 (+) True LOC103045856
TU122282 lncRNA downstream 15502 14665730 ~ 14773367 (+) False LOC103045856
TU122318 lncRNA downstream 211114 14861342 ~ 14861709 (+) True G90941
TU122323 lncRNA downstream 263835 14914063 ~ 14916026 (+) True G90946
TU122329 lncRNA downstream 315631 14965859 ~ 14968245 (+) True G90952
XM_007250370.3 mRNA upstream 6745 14590842 ~ 14639053 (+) True rsu1
XM_007250371.3 mRNA upstream 6745 14596493 ~ 14639053 (+) False rsu1
XM_007250369.3 mRNA upstream 57670 14533600 ~ 14588128 (+) True cubn
XM_022673629.1 mRNA upstream 112424 14522872 ~ 14533374 (+) True trdmt1
XM_022673628.1 mRNA upstream 311973 14331398 ~ 14333825 (+) False ppp1r17
XM_007250372.3 mRNA downstream 43265 14693493 ~ 14699551 (+) False LOC103045856
XM_015606106.2 mRNA downstream 76760 14726988 ~ 14733577 (+) True LOC103045139
XM_022673632.1 mRNA downstream 84664 14734892 ~ 14893717 (+) False steap2
XM_007250373.3 mRNA downstream 84664 14734892 ~ 14744925 (+) False steap2
XM_022673631.1 mRNA downstream 84809 14735037 ~ 14744925 (+) True steap2
TU122125 other upstream 371100 14272064 ~ 14274698 (+) False eif1b
TU121747 other upstream 1697548 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 2488936 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 2507160 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 3738626 10904644 ~ 10907172 (+) False LOC111193328
TU122457 other downstream 509987 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 626025 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 631281 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 1744986 16395214 ~ 16419380 (+) False trim71
TU123306 other downstream 3261673 17911901 ~ 17912443 (+) True G91678

Expression Profile