RNA id: XM_022673339.1


Basic Information

Item Value
RNA id XM_022673339.1
length 1101
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC103031295
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9012446 ~ 9015707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAACGAAAAGTTAGGGAACTTCCTAATACTGAGGCCCAGGTGTATAAGAAAAGGAAGACTGAAGAAACCTGTCCTGAGAGACAGATTCAGACAGACGCCCCCAAACCAGACACCTTTGCTTCTCGGTACATTACTGGGTGCAAACTGGGTCAAGGAGGTTTTGGAGCTGTCTTCGCTGGAACCCGCATTTCCGATGGCCTAGAGGTTTTTGACTCAACACGTCCATAACTTTATTATCTCATACTTTCCTCTTTTTAATActcagattaaaaaataatcatataaaTATCATATTGTCTTTGTGTGCAGGTGGCGATTAAATGTGTCATGAAGCGGAGATATGAAAAGTGTATCCGGGATCCTGCAGGCAGGATTGTGCCTTATGAAGTGGctatgatgatgaggatgagcAATCCACCCGTCAGAAACATAATCCAACTGGTGGAGTGGTTTGATGAGCCCAAGCGCTTCATTTTAATTGTTGAGCGCCCTCCGTGTTGCATGGACTTGAACATCTTCATACACCGTTGTGGAGGTTCACTTAATGAACGCACAGCCAAAAGCATCATGTTGCAGGCAGTGCAGGCAGTGAGAACATGCCACGAGCGAGGTGTCTTTCACCGGGACATCAAACTGGAGAACTTTCTCATCAACCCCCGAACCTTGGAGCTGAAGCTGATTGACTTTGGCTGTGGTGATTGGGTGAAGTCTACTGGATACAATTCTTTTGCAGgcACCCGGATTTACTGCCCCCCAGAACATCTGATAGAGGGGAGGTACCATGCTAAGCCTGCAACAGTCTGGTCTCTTGGAGTCCTACTGTACAGGATGGTTTGTGGATTCTTCCCCTTTAGAAACGATTGGGAAATCTGTGGGGGCCTTAGATGCATCAGAAAAGGCCTATCTCATGAATGCTGCGATCTGATCATGAGGTGTCTGCAGCCCAGGCCAAACTGGAGGCCCTGTTTTGAACAGATCTTGCATCACAACTGGTTTCATGTCTAGGATCAGgtTGTGAAAAGAGATCCCTACAGTGACATGCTGAAGGAAACCACAACAGCATTTACAAAGCCAATGAGTGCATAGTTTAGTATGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120087 lncRNA downstream 62158 8949968 ~ 8950288 (-) True G89288
TU119948 lncRNA downstream 473923 8537835 ~ 8538523 (-) True G89179
TU119945 lncRNA downstream 498607 8508887 ~ 8513839 (-) True G89176
TU119938 lncRNA downstream 538706 8472574 ~ 8473740 (-) True G89169
TU119904 lncRNA downstream 589655 8419677 ~ 8422791 (-) True G89141
TU120130 lncRNA upstream 66005 9081282 ~ 9082106 (-) True G89322
TU120139 lncRNA upstream 76346 9091623 ~ 9130120 (-) True G89328
TU120142 lncRNA upstream 116906 9132183 ~ 9138868 (-) True G89331
TU120144 lncRNA upstream 139484 9154761 ~ 9156267 (-) True G89333
TU120231 lncRNA upstream 306266 9321543 ~ 9321887 (-) True G89399
XM_015605714.2 mRNA downstream 117008 8812404 ~ 8895438 (-) True LOC103045042
XM_022673472.1 mRNA downstream 218621 8738885 ~ 8793825 (-) False LOC103046449
XM_007248857.3 mRNA downstream 218621 8738885 ~ 8793825 (-) True LOC103046449
XM_007248858.3 mRNA downstream 249656 8738885 ~ 8762790 (-) False LOC103046449
XM_007248856.3 mRNA downstream 278559 8695370 ~ 8733887 (-) True LOC103046152
XM_022673350.1 mRNA upstream 65136 9080413 ~ 9100465 (-) True LOC103038042
XM_007250443.3 mRNA upstream 93486 9108763 ~ 9144163 (-) True LOC103040550
XM_022673476.1 mRNA upstream 133340 9148617 ~ 9154619 (-) True mrs2
XM_022673477.1 mRNA upstream 133340 9148617 ~ 9154616 (-) False mrs2
XM_007250436.3 mRNA upstream 156283 9171560 ~ 9195276 (-) False cep192
TU119448 other downstream 1769876 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1894320 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 4417121 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 4446242 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 5320982 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 787494 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 879548 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 946005 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1024280 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1208243 10223520 ~ 10224663 (-) True G89751

Expression Profile