Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU117259 |
| length | 1213 |
| lncRNA type | sense_over |
| GC content | 0.46 |
| exon number | 4 |
| gene id | LOC103044865 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035905.1 |
| NCBI id | CM008308.1 |
| chromosome length | 42966623 |
| location | 40762672 ~ 40770501 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0019538 | protein metabolic process | biological_process |
| GO:0030163 | protein catabolic process | biological_process |
| GO:0009056 | catabolic process | biological_process |
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:1901575 | organic substance catabolic process | biological_process |
| GO:0044248 | cellular catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0044267 | cellular protein metabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0022624 | proteasome accessory complex | cellular_component |
| GO:0008537 | proteasome activator complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU117210 | lncRNA | downstream | 36365 | 40725512 ~ 40726307 (-) | True | G87034 |
| TU117186 | lncRNA | downstream | 92351 | 40670058 ~ 40670321 (-) | True | G87013 |
| TU117184 | lncRNA | downstream | 114644 | 40647114 ~ 40648028 (-) | True | G87011 |
| TU117183 | lncRNA | downstream | 134760 | 40627367 ~ 40627912 (-) | True | G87010 |
| TU117179 | lncRNA | downstream | 183329 | 40579109 ~ 40579343 (-) | True | G87006 |
| TU117271 | lncRNA | upstream | 72259 | 40842730 ~ 40843410 (-) | True | G87067 |
| TU117553 | lncRNA | upstream | 139175 | 40909646 ~ 40966122 (-) | True | G87271 |
| TU117550 | lncRNA | upstream | 220297 | 40990768 ~ 40991617 (-) | True | G87269 |
| TU117586 | lncRNA | upstream | 350568 | 41121039 ~ 41121767 (-) | True | G87301 |
| TU117590 | lncRNA | upstream | 367396 | 41137867 ~ 41139853 (-) | True | G87305 |
| XM_022673296.1 | mRNA | downstream | 100935 | 40651386 ~ 40661737 (-) | True | LOC103044545 |
| XM_022673297.1 | mRNA | downstream | 111655 | 40631203 ~ 40651017 (-) | True | LOC111193263 |
| XM_007233652.3 | mRNA | downstream | 135735 | 40623224 ~ 40626937 (-) | True | LOC103044257 |
| XM_022673295.1 | mRNA | downstream | 166771 | 40586730 ~ 40595901 (-) | True | LOC103044720 |
| XM_022673294.1 | mRNA | downstream | 309075 | 40448570 ~ 40453597 (-) | True | LOC103024062 |
| XM_022673303.1 | mRNA | upstream | 74489 | 40844960 ~ 40858464 (-) | True | gnpnat1 |
| XM_022673309.1 | mRNA | upstream | 223897 | 40994368 ~ 41023646 (-) | True | gch1 |
| XM_022672516.1 | mRNA | upstream | 256399 | 41026870 ~ 41083608 (-) | True | wdhd1 |
| XM_022673314.1 | mRNA | upstream | 337249 | 41107720 ~ 41151272 (-) | True | gpr137c |
| XM_007241976.3 | mRNA | upstream | 463374 | 41233845 ~ 41252428 (-) | True | LOC103035710 |
| TU117171 | other | downstream | 226338 | 40533368 ~ 40536334 (-) | True | LOC111193261 |
| TU116404 | other | downstream | 2693620 | 37982874 ~ 38069052 (-) | True | G86432 |
| XR_001518670.2 | other | downstream | 3661091 | 36591633 ~ 37101581 (-) | False | nrxn3 |
| XR_002650394.1 | other | downstream | 3674741 | 36591633 ~ 37087931 (-) | False | nrxn3 |
| TU115663 | other | downstream | 5467638 | 35288232 ~ 35295034 (-) | True | G85902 |
| TU117804 | other | upstream | 1025064 | 41795535 ~ 41804888 (-) | False | LOC103040189 |
