RNA id: TU117265


Basic Information

Item Value
RNA id TU117265
length 1157
lncRNA type sense_over
GC content 0.46
exon number 4
gene id LOC103044865
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 40762672 ~ 40770501 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACTGACCTTCAGGATCATCAGAGCTCTCAGATCTGCTGTCCTACAGGATCAGCTCAGTGCAGAAGtGAAAGACAGGGACGGACGCCAGCAGCTGATACACACACATCATCCCCTGAGCATCTGCCAGTCTCGCGCCCTTCACCACCGCGGCCCCCAGCCAGcgctctcctctgattggtcagcagGCCGGTCGGGATGGAGCGTGTGCAGAACATCACGCGTTCGGCCATCCGCAGGGCGTCCAACATCGAGGTGAACCCGCAGACCAAGCGCAACCTGCAGGACCTCTTCATCAACTTCTCCCTCATCCTCATCTGCCTGCTGCTCATCTACATCATCGTCCTGCTGATGTGATGCCCCCCGGGGGCCAACGGGCATGAACTGGACACTGGTTTaagggggggggcggggggttGGGGGGCGGAAACATTCGGGTATGTGGGCGGGATTTATTGGAGTCTATATGGAATACACTACATGTACAAATATTTTTGGACACTCTTTCAAATGAATGCTGAATTCagttactttaagttgcaccaatTGCTGACATTGCTTGTCTTGTCCCTATACTGCCCCTTTACTATCGGTATACTGCCCCTATACTGCTTCTATACTGTGcctatactgctctatactGCCCTTATACTGTCCCTTATAATGTCCCTATACTATACCCACAATGTCCCTATACTGCTCCTTTACTGTCCCTATACTGCCTCTATACTGCCCTTATACTGTCCCTTATAATGTCCCTATACTATACCCACAATGTACCCATATTGCCCCTATGCTGTCCCTTTACTACCCCTATACTGTCCTTATACTGCCATTATACTGTCTCCCTACTGCCCCTATATGAATAGTATTTCCTGGaacagcagataaaaaaattaacatatgaCTATAGAGGGGTATTATTATATTGCAATCAAtcaacagtagagacagttactccaaaagcaaaagcatacactctttttaatacccttaattacAAAAGGAACTAAAGAAACGACTGAGTAGGTGACacaatacttttgtacttttgtctACATTGCACACATGTTGTCATTGTTTGAACATGACCTCCCTTCTcccttttttgtattgtttttgttttgttttaaagacAGTAAAGATGTTCTTCACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117210 lncRNA downstream 36365 40725512 ~ 40726307 (-) True G87034
TU117186 lncRNA downstream 92351 40670058 ~ 40670321 (-) True G87013
TU117184 lncRNA downstream 114644 40647114 ~ 40648028 (-) True G87011
TU117183 lncRNA downstream 134760 40627367 ~ 40627912 (-) True G87010
TU117179 lncRNA downstream 183329 40579109 ~ 40579343 (-) True G87006
TU117271 lncRNA upstream 72259 40842730 ~ 40843410 (-) True G87067
TU117553 lncRNA upstream 139175 40909646 ~ 40966122 (-) True G87271
TU117550 lncRNA upstream 220297 40990768 ~ 40991617 (-) True G87269
TU117586 lncRNA upstream 350568 41121039 ~ 41121767 (-) True G87301
TU117590 lncRNA upstream 367396 41137867 ~ 41139853 (-) True G87305
XM_022673296.1 mRNA downstream 100935 40651386 ~ 40661737 (-) True LOC103044545
XM_022673297.1 mRNA downstream 111655 40631203 ~ 40651017 (-) True LOC111193263
XM_007233652.3 mRNA downstream 135735 40623224 ~ 40626937 (-) True LOC103044257
XM_022673295.1 mRNA downstream 166771 40586730 ~ 40595901 (-) True LOC103044720
XM_022673294.1 mRNA downstream 309075 40448570 ~ 40453597 (-) True LOC103024062
XM_022673303.1 mRNA upstream 74489 40844960 ~ 40858464 (-) True gnpnat1
XM_022673309.1 mRNA upstream 223897 40994368 ~ 41023646 (-) True gch1
XM_022672516.1 mRNA upstream 256399 41026870 ~ 41083608 (-) True wdhd1
XM_022673314.1 mRNA upstream 337249 41107720 ~ 41151272 (-) True gpr137c
XM_007241976.3 mRNA upstream 463374 41233845 ~ 41252428 (-) True LOC103035710
TU117171 other downstream 226338 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 2693620 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 3661091 36591633 ~ 37101581 (-) False nrxn3
XR_002650394.1 other downstream 3674741 36591633 ~ 37087931 (-) False nrxn3
TU115663 other downstream 5467638 35288232 ~ 35295034 (-) True G85902
TU117804 other upstream 1025064 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile