RNA id: TU17460


Basic Information

Item Value
RNA id TU17460
length 785
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G13012
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23543555 ~ 23651238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtttggtggcttgtgatcatccatctaatttggtaaaatcaaagaattagaatcttttttttcttccccagagctgtatgtatatatatttatattatattgtgttaATTTTCTCCGGCCTGTCCGCCTCCCTGCTTTGcgctcgctctttctctccagGGTAAAGGAATGACGGCTGTGTGGAGGTGCTTTCAGTCAGGTCCTCTCCGCTCTCCCTCTGTTCTCAGGAATTCAgtacatataaatacatgtaACGACAGAAGACTATCAGTATTGAACGGGCGTGAAATGAAGCGTTGAATCTGTtgctcgaaaaaaaaaaaacgtgtagtaaaatatattaaatatattgggCAGTAGCTTATCGGAAGTGATGTCAGCGTCTCTGTTTCGGAGCGTCGGAAAGTGAAGCTCTGAGTGATGCTGATATTGAGAAGAAAGTGCTGTTCTTCATCATTACATGCTCCTCCTTGtgtttggtttatgtttatgttttgtatgtatgtgtgtatatgtatgtgtgcattagaatgagtgttttttgttttatttttgttttgttttttatgtaaaatattgcaCTGGCATTGCAGGTACTTCCACAATATGAAGCTTGTTGGTACATTTTAGCTCTCGTTGAACTGAATGGGAATATATCGGAATTCCTGGATGACACACAAGCTCCTCATCGCCTGATTGGATaagacttaaaaaataaaataaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17451 lncRNA upstream 43624 23512735 ~ 23570534 (+) True G13007
XR_455597.3 lncRNA upstream 85169 23521951 ~ 23528989 (+) True LOC103032198
TU17477 lncRNA upstream 85406 23521988 ~ 23528752 (+) False LOC103032198
TU17454 lncRNA upstream 104076 23502615 ~ 23510082 (+) True G13008
TU17442 lncRNA upstream 165886 23447993 ~ 23448272 (+) True G12999
TU17462 lncRNA downstream 4889 23647792 ~ 23651238 (+) True G13012
TU17469 lncRNA downstream 4889 23647792 ~ 23651238 (+) False G13012
TU17473 lncRNA downstream 4889 23647792 ~ 23651238 (+) False G13012
TU17512 lncRNA downstream 67653 23710556 ~ 23724434 (+) True G13043
TU17522 lncRNA downstream 123582 23766485 ~ 23769612 (+) True G13051
XM_022675203.1 mRNA upstream 113929 23148011 ~ 23500229 (+) True LOC103034742
XM_022675190.1 mRNA upstream 999649 22533679 ~ 22614509 (+) False LOC103038567
XM_007258871.3 mRNA downstream 102281 23745184 ~ 23750130 (+) True rnf26
XM_022675324.1 mRNA downstream 253589 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA downstream 253642 23896545 ~ 23909676 (+) False LOC103047782
XM_022675283.1 mRNA downstream 306488 23949391 ~ 24473546 (+) True bcas3
XM_022675286.1 mRNA downstream 306488 23949391 ~ 24473546 (+) False bcas3
TU16886 other upstream 1101522 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1229186 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1272645 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2150509 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 2637881 20976204 ~ 20976277 (+) True trnan-guu
TU17542 other downstream 211095 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 1071448 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 1072987 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 1213030 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 1409610 25052513 ~ 25056103 (+) True G13445

Expression Profile