RNA id: TU17473


Basic Information

Item Value
RNA id TU17473
length 2633
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G13012
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23543555 ~ 23651238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCTTTAATAAACCCCGGTCACATGACCATATAAACAAAGAGAATAGACCTGCATCGTGctgtaaaatcctttaaaatgtGAGTTTGAGTAGTGGAGGTTCTGCAGTGTCGTGTCTGTGGGTTTAAAGGTTTCTTTGGTATTTAATGTTGTGTAGATTATGAGCATAATGATGCTGAATATCTCATGTGCTCTCAGTTTATCTCTACATCCTGTGTTTGAGTTTgcgttttacattttaaagaaattaaatgtaGAAATAGGACAATTAAACTGCCTGATtaataaatcacaaaaaatacaaatgaaagTAGTTAGAAAAATGAAACAACGACTAACAATAAGgtaaaaaagaagcagaattaCCTGCTCTTCTCTGCACAGAAAAAGCCTTACAACCAGATCAGATTAACACATCTATTATATACATCAGTGCAAGAGGAAGACAGCAGGTCGTTATCATCAGAAAACATATGAAATACATCAGACTGTAGAGGGATTGgacctttttaatatatataatttgttcctgtgcaaaaaaataaaaataaaaaatgcagtgGCCCTTTCAGGAGAAGGAAACACAAAGAATTTACATTCAAGTGAAGTTTGATGTCGTTTTGGAGCATTTCCATTGGTccaaaaagtaaataattggagataattgtattttttgcatgacagtgacTCCtacttacacacaaacactataattcaaaagtttggaaccAATAGTGCTGAtagtattttgttatatttaatagtaattcatagtttatctgttattttcagtgttttaagcaattaaaaaatatgcaaagaTGAAAAAGcatcatgtttttctttaagtCATAATGATTCTGAACAACTTAATTATAAATATtcgatattttcctctgtactTTTAGAAACACGTATAACTCATAACCTGTATTAATCATttttgattttctgattttactgtagcattatTTATGTTGATCTGCAAACAGATTGGGTTTATTTAAACGGAATATTGGTTccaatcttctgaactgtgcttgtgtgtatgtatgtatatatataatttaggaCCACGTCTGTAAGTGACCTAAATCAGATATgccacgttcacacagccatgaaaaaatcagatctgatccacattgagcaaaaacaaaaaatcagctTTGGGTCACTTtcgcctggtaatgtgaacgtagctttCCTGGCTTTATTGTTCTCATAATATTATTCTCAGTTGATTTGGTCGTTATCTTCTCTTACCCTAAACAGtatgtgcttaaaaaaaagacGCTTTAATGTGATTGGTGGATTTTAAGGTGTATTAAAGGggaagtgtgtgtacagtgtttttagCACAGCAGTGTGAGACGTCTCTCGGTGTTTCAGTGCACGGACTATGTGATGCAGAGCGATCTGAACAGGCAGAAGAACAGCAAAGCAGGACTACGGTGGCCCAGAGAGACATATCATAATAACATTTACGAATCAAACTAATAGATGATAACGcaactacattaagaaaacGCAGCATTATAGGAAAAGCAAATATATTTGCCACACCAGAAATGCATACAAATATACATTcatcagccaatcaaacagcagttCAGCCTCACCCtcacctttttttattaattttagttGGATTTTCTTAATTTAGTTGGATTTTCGTAATTTAGTTGGATTTTCTTAATTTAGTTGGATTTTCTTAATTTAGTTGGATTTTCTTAATTTAGTTGGATTTTCTTAATTTAGTTGGATTTTCGTAATTTTGTTGGATTTTCGTAATTTTGTTGGATTTTCTTAATTTAGTTGGATTTTCTTAATTTAGTTGGATTTTCTTAATTTGTAGTTGCGttgtcatctttttgtttgctttttaaatgttgttgtttGCTGCCTTTTTTAACGTAGTTGCGTTTTCTTAACTCTTTCTGCATCCATTAGAACgaacatcatgtattttcttctttattgCATATTCTCTCACCCtcacctttttttattaatttactgattttaaatgcattgcagacagaaaaaaaacatgacattttttAGTACTGGAAATAATattaggtctgaaagggttaatttagTTGCGttgtcatctttttgtttgttttgtaaatgTTGTTATGATGTGTCTTTTCTGGGCCACCGTACAGGACAGTCTTCAAACAGAGGTCAAACAAAGGTCGCTCCTCCAGATCAACAGAGAGAGTCTCCAGTCGGCGGTGGAGAATTGTCCCTCAGGGTTTCTCTGTGGGAAgcattttaaatatctaaatatgtaCACTAGatcatatatacaatatataaacagCACAGGCTGTTGGAGGACAGCGCATCCTGGCAGGGTTAAAAATACTGAAACGGACTGCTTTACAGGGTGGAGGAGACCGGCCAGTGCAGCAGGGCGGAGGCGGAGTCTCTGAAGTGCACCGGGTCCCGGCCcagaggtggaggtggaggtggaggtggaggggtTAAATGGGGGAATTCCTGTGAGGAGAAGGCTGGAGGCCTCTGGTTGGAGGGTctcaccctgagagagagagtgtttggTGTAGCTGAAGGCTGTTAgtgactcctcctcctcctcctcctctctgagCATCTGTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17465 lncRNA upstream 362 23641457 ~ 23647430 (+) False G13012
TU17497 lncRNA upstream 957 23622224 ~ 23646835 (+) False G13029
TU17496 lncRNA upstream 1580 23622224 ~ 23646212 (+) True G13029
TU17470 lncRNA upstream 2202 23543555 ~ 23645590 (+) False G13012
TU17460 lncRNA upstream 4889 23614158 ~ 23642903 (+) False G13012
TU17512 lncRNA downstream 59318 23710556 ~ 23724434 (+) True G13043
TU17522 lncRNA downstream 115247 23766485 ~ 23769612 (+) True G13051
TU17540 lncRNA downstream 189050 23840288 ~ 23843275 (+) True G13065
TU17543 lncRNA downstream 205753 23856991 ~ 23857360 (+) True G13068
TU17544 lncRNA downstream 206364 23857602 ~ 23857916 (+) True G13069
XM_022675213.1 mRNA upstream 9580 23556718 ~ 23638212 (+) True cbl
XM_022675217.1 mRNA upstream 10788 23556717 ~ 23637004 (+) False cbl
XM_022675203.1 mRNA upstream 147563 23148011 ~ 23500229 (+) True LOC103034742
XM_022675186.1 mRNA upstream 1033283 22533680 ~ 22614509 (+) False LOC103038567
XM_007258871.3 mRNA downstream 93946 23745184 ~ 23750130 (+) True rnf26
XM_022675324.1 mRNA downstream 245254 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA downstream 245307 23896545 ~ 23909676 (+) False LOC103047782
XM_022675283.1 mRNA downstream 298153 23949391 ~ 24473546 (+) True bcas3
XM_022675286.1 mRNA downstream 298153 23949391 ~ 24473546 (+) False bcas3
TU16886 other upstream 1135156 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1262820 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1306279 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2184143 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 2671515 20976204 ~ 20976277 (+) True trnan-guu
TU17542 other downstream 202760 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 1063113 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 1064652 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 1204695 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 1401275 25052513 ~ 25056103 (+) True G13445

Expression Profile