RNA id: TU17470


Basic Information

Item Value
RNA id TU17470
length 2341
lncRNA type sense_over
GC content 0.36
exon number 3
gene id G13012
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23543555 ~ 23651238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatatatatatatatatatatgtatgtcgcACAGTATACCAATTTGTGCTCTGatactgtcactttaaaatgtGGAAGTGTATAAAGTTacttatatatagagagagttcTGAGTTATGTGGAAATGGCGATGTGTAATTTTCATTTAACATTCCTGTAAGTCTGtaagaattttatttttattttttgtctcttatatattttttttcttatgtctctttttgttttgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtttgttggtttACTGATCTGAATAATACTGTGAGCAGTGCCAtatgtttgtttagaaatgtcAGTAACTCTGTAATTCTGCTGCCCAGAACACGGCCTTGTTcctgtaaaaagagagagagagagagagagagagtagataTACTGgcgtaaaaaaaagaataagtgCGTTAGAAAATGCGTAAGTTgcccatttttattttatttatttatttttttttctttgctttattctccccaaaaaacaaacatcctgtagagtttttctttctcttttttgttaaaGGGTCGGCTGGACGGTCTCAGCTCAGACCACAAGAGGGCGCCGTCTCCTCACGTTgccatattaatattattattctcaTCCTTGAGTATTGCATTGAGGAGTGtccttttttctgtctttctgtctatctgtctttttttttttagtctttcttTCAGTCGTGCTAGACTCTCCTCTATCATATCACTTGGGACGTATCGGACGTATCGTGCAGCGCTCTGCTTTTATACACgttttaatttaatgaatagaaaagaaacaaacaaaaaacgaaCTAAAGTCCTCTAATCTCTGCTAGTCTCTACTCTACTTATAGGTACTGCCTCCTTTATTATGGTACAGCCTGTGAATCCGGTGCTGTCGAAACTCGAAACTACAGAGAAAGCTCTGAACACAGGAAACATCTCCGCGGCTAATATTCAGGTGATCTGCGCTGATGCTGATAACGCAGACGTATATATAAACGAGGACGTGTCCAGTCAGTGTTAGGAAGGAAGGTGTATTGTACTATTACTCCATATGTTATGTATGCATGTAAATGTTGTTATTTAACAATGTAAGATACTCATGAATGTTTCTTGCCACCATCAGTAGTAGCCTTAACTCGAGGAACGTGGAACGTGGGCTGTGGGCTGGAAGAGGCGTTCGTTCCAGCCTTAAAGCAACgtctcaaaaataaaataaaaaaaaggagataGAGATTGATAgattaatagatagataaagagataaaaagagagagagaggagagcacACCATGTCCTGCCAGTACGGCTCTGAGATATGCTTTGCCTTACTGATATAAAATCAGTCACGCTCATAAAATCGACATAAAATCCGAACTGCCATTCTCCCTCAGTgccatgattatttttttattaattattccagtgatcaatattattttttatcgtGTTGACGTCTGTCCACCTGTCTGTGAGCGAGCATTtctctgttttaataataaatcgACTGCTTTATCTATGGATTATTAGATCTAAAAACCACCCCTTTTATAGATGTGGCCTTTAGATTGGTTCTCATGGCTTTTCAGATTAGAAGAACCAGGTttggaggtctgaaagctctgagaACCGGCTGGAgaaccaattaaccaatcaaccaatcatcTTTAGGTTCTTAATCTACTAATCTTAATAATTAATGCACCTGATCATAACTCAACACACTCAGGTTCTCCTGAACCTGATGCATCATTGCCTCGATAAATACGATAAATATCTGGTTTATTTAAGCTTGACCTtccttattatttaaaaaaacaagttttgaaGGGcaacttaaataataaataaaataaaataaaataaatgcattggagatgtttaaaaaaaaaacctctttaTAAAGCAGAGCCACAAAACAcctgtataaataaagtatgtaAAAATGAAGTTGGGCATCCAGTTCACAGGTTGATAGTGATTAATGTTCTGTAATAGTGAATTAATCTGAACTCtctgagggggGGGGGGGAGCCGGTCGGTGcagatcagcagcagcagtttgtagAAACTGGAAATCGTTCAGAGTTTAGAGAGTAAAGCAGTGAGAACGTTCCCCCTCTCcctgaagaaagaaaagagaagaagaagcggaggagaggagaggagggcgTTCATGTGTgtcattttttccttttgtcaAGAAATAAAGactaatgttatttattaatgttgatGTACTCCAACCCAGAGACCCCTCCTTCATAaagtcattttcatttttttggatTTATACATGTTATTAAAGCAATTTTGAATAAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_455597.3 lncRNA upstream 14566 23521951 ~ 23528989 (+) True LOC103032198
TU17477 lncRNA upstream 14803 23521988 ~ 23528752 (+) False LOC103032198
TU17454 lncRNA upstream 33473 23502615 ~ 23510082 (+) True G13008
TU17442 lncRNA upstream 95283 23447993 ~ 23448272 (+) True G12999
TU17435 lncRNA upstream 158208 23384132 ~ 23385347 (+) True G12992
TU17462 lncRNA downstream 2202 23647792 ~ 23651238 (+) True G13012
TU17469 lncRNA downstream 2202 23647792 ~ 23651238 (+) False G13012
TU17473 lncRNA downstream 2202 23647792 ~ 23651238 (+) False G13012
TU17512 lncRNA downstream 64966 23710556 ~ 23724434 (+) True G13043
TU17522 lncRNA downstream 120895 23766485 ~ 23769612 (+) True G13051
XM_022675203.1 mRNA upstream 43326 23148011 ~ 23500229 (+) True LOC103034742
XM_022675190.1 mRNA upstream 929046 22533679 ~ 22614509 (+) False LOC103038567
XM_007258871.3 mRNA downstream 99594 23745184 ~ 23750130 (+) True rnf26
XM_022675324.1 mRNA downstream 250902 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA downstream 250955 23896545 ~ 23909676 (+) False LOC103047782
XM_022675283.1 mRNA downstream 303801 23949391 ~ 24473546 (+) True bcas3
XM_022675286.1 mRNA downstream 303801 23949391 ~ 24473546 (+) False bcas3
TU16886 other upstream 1030919 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1158583 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1202042 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2079906 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 2567278 20976204 ~ 20976277 (+) True trnan-guu
TU17542 other downstream 208408 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 1068761 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 1070300 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 1210343 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 1406923 25052513 ~ 25056103 (+) True G13445

Expression Profile