RNA id: XM_007236754.3


Basic Information

Item Value
RNA id XM_007236754.3
length 7296
RNA type mRNA
GC content 0.44
exon number 19
gene id LOC103045399
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25561633 ~ 25642743 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTCGTGTGAAGTGCATCCGAGTGGCTAACTGCATCAGGACACATTGGCCTGTCAGCGGTGAGCAGAATGGCCCTTTGTACCACAACAGTGCGGCGGTCTGTTTGCCACGGCCCCCTGCTGGCGACAGGGCGCTACTGCTCTCGGCGCGGGCCGGCTGAATGGAGTCTTTATGAATGGTTGAGGCCGAGGGTGATTGTGAAAGACGCTTACTGTCCGGGAAGCATGTATTTATGTGCTGTGGAATACGCAACGATTTCTCTGAGATCATTTTAAAAGAGACTGGTGGTATATGGACACACGCACAGACGCACACACAGGCTCATACACCACGCTTGTTCTCTATACCTCTTGGCAGCTAAGGAGAGATGGGCGGCTCCTTCTTTTGGaactttctgttctttattatCATAATGCTCTCTGAGTGGAGCTTGCCAGCAATAGTCAACCTCTCTCGTCCCCTatcccccctctctttctctctctctttccctcctctTCTTGGATCGAGATGTCCTGCTTGTACTTTTCCTCTGTCAAATTTCACAGCAGTTTCTCcactctccctctgtctccctTCCACTTCTTATCTCTCGCTCCCTTCCATTCTCATTAGTTTGTTCTACTCTATGATCAATGTGATCCCCCTGATCCTCACAGTCTTGtaacctctctctgtctttatctgtctgtctgtctctctctctctctctctctcccctcccttctcTCTAACTTGTTCTTACCCATGATCCCCCTTTCCTCACTGCCCCTGTTCAGCCACATTCTCGCTCTCTGATTTTCTctgtccgtctctctctcttctttataCTTCTCATACTATTTGTTTGTTCTCACCCTCTCTTACATTCTTCCTCTTCCCCCTgccttccctccctctctctctctctctctctctccctctccctcccttgctgctcgctcgctcgctcactcCCTCCTCTCCGTGGCTGGATGTTTACCATCTCTCTCTGACCACCAGCAGAAATACTCAGCGGCAGTGAGCAGTGTAGACTCGCGGCTCTATAATGCGCAGGGATCTCTCACTGGGTAAGATGTCCAACTACAAGCGTGCAACttttgaggaggaggaggggacgGATGTTCCAGCCGATGGAGCCATTTCTCCCGACAGTGTGGAGGTGGGGTTCCGGAAAGGTGGTATCCAGTTTTTTGGTCCGTTGGGCCGGAGGACTCAGTTGGAGGTGGTTCTAGCTGGTCTGCTCTTGGCCTCTCTGCTAGCACTGTTTGGCTGTGCAGTCACGCTAGGTGTCCGTTATAACAGAGATCCATCACGTAGCCTGTGTCTGACGGAGGCCTGTGTGACTGTGGCCAGTAAGATTGTGGAGTCACTGGACCGTACCGTTGACCCCTGTCAAGATTTCTACCAGTATGCGTGCGGAGGCTGGATCCGCAAAAATCCTCTTCCTGACGGGCGGTCGCGCTGGAGCACCTTCAATAGCATCTGGGACCAGAACCAGGCTGTGCTTAAACATCTACTGGAAAATGGCACCTTTAACTCGAGCAGTGAAGCGGAGAAGAAAGCTCAGTTCTACTACTTGTCCTGTCTAAATGAGCAACGTATTGAAGAGTTGGGTGCCCAACCACTTGTTGATCTTATTGCTAAGACAGGGGGCTGGAACATCACCGAAACCTGGGATAAGGATAACTTCATGGATGTTCTGAAGACAGTGTCAGGCCCTTATAGAGCTCAGCCCTTCTTCACTGTCGGGGTCAGCGTGGACCCCAAAAACTCCAACAGTAACGTCATTCAGGTGGACCAATCCGGACTCTTCCTTCCCTCTCGGGATTATTACCTCAATAAGACTAATGAGAAGgtattAAAGGCCTATCTGGATTACATGGTGGAGCTGGGCTTGTTGCTGGGGGGAGATAAGAACTCCACTCAGAATCAGATGCAGCAGATTCTAGACTTTGAGACGGCGCTGGCCAACATCACAGTGCCTCAGGACGAGCGCAGAGACGAGGAGaaaatctaccacaaaatcACCATCGCAGAGCTGCAGACCCTGGCTCCTGCTGTGGAGTGGCTGGACTACCTGTCCTCTGTGCTTTCACCCCTGGAGCTGAACGATACGGAGCCGGTGGTGGTTTACGCCAAGGAGTACCTACAGCAGGTCTCAGAGCTCATCAACAAGACTGACCGCAATCTGCTGAACAACTACATGATCTGGAATTTGGTGCAGAAGGGAGCATCTAGTCTTGACCAGCGATTCGAGAACGCTCAGGATAAATTACTGGAGAGTCTTTATGGCACCAAGAAGtCGTGTACTCCGCGCTGGCAGACGTGTATTGGGAACACAGACGATACGCTGGGTTTTGCTTTAGGAGCACTCTTTGTTAATGCCACCTTTGACAAACACAGCAAAGAGATAGCTGAAGGCATGATCAACGAGATCCGAACTGCCTTTCAAGACGCACTGGATCATCTAAACTGGATGGATGATCAGACACGAAAGGCTGCCAAGGAAAAGGCTGATGATATTTATGACATGATCGGTTACCCAGACTTCATCCTGGACCCCAAGGAGCTTGATGATGTTTATGATGGGTATGATGTGTCCGAGGATAACTTCTTCCAGAACATGCTCAACTTCTACAACTTTTCAGCACGGGTGATGGCAGACCAGCTCCGCAAACCCCCAAATAAAGACCAATGGAGCATGACTCCCCCCACAGTAAATGCATACTACATGCCCACCAAGAACGGCATCGTCTTTCCAGCTGGAATCCTGCAGGCTCCCTTCTATGCCCGGGATCATCCAAAagcaCTGAATTTTGGAGGCATTGGTGTGGTCATGGGGCATGAGCTTACTCACGCTTTTGATGATCAGGGTAGAGAGTATGATAAAACTGGGAATCTCAGACCTTGGTGGCAGAACTCTTCAGTGGATGCCTTTAAAAATCGAACAGAATGCATGGTGGACCAATACACTCAGTACACCATCAATGGAGAACACATCAATGGAAAACAAACCTTGGGAGAGAACATTGCTGACAATGGAGGCCTGAAAGCTGCCTAtcatGCATACAGGTCATGGGTGAAAACAAACGGAGAGGAGAAAAGTCTCCCAGCAGTCAATCTTACCAATGACCAGCTCTTCTTTGTAGGGTTTGCACAGGTCTGGTGTTCAGTACGAACCCCGGAGAGTGCTCACGAGGGTCTAATGACCGACCCTCACAGCCCACCCAAATACCGTGTTATTGGCACGCTGTCCAACTCCCCTGACTTCTCCCAGCATTTCAACTGTCCGCTGGGCTCCCCTATGAACTCAGGCCATCGCTGTGAGGTGTGGTAAGGCCAGGAGCGCGGAGGCGAGCCAGGGGGCGGCCGGCTTCTCTTTGCTTTGACCAGTCAGAGCTGAAAGGATGGACTGTGCCCTTCTACCAAGcactggactttttttttttttttcttctttttcttcctttttcttcaCAGAACATGAAAGGCTGCAGGACCTGAAGTGGATCTGAACAGGTTGGTCCAAAGGCTGGAGAATACACAGGGAGtgttttagcttttattatGTCCAGCCTTTAGAACAGGCAACTGATCGCTCACTTTCCTTCTGCACCTCCACAGAAGCCCACACTGGGCtgtctcatttctttctttttttttttttttgctgcacttGAACTTCTGGGTGGTACAGTGAGGACAAGGATAAATCCCTATCCCTTTccctttgcttttgtttttttgtgtgtatgtgtgcttcaCGCCCTGTTTACAGCAGTCCAGCAATCCTGGACAGGCCTCATTCCCCaggacataaaaaaaagaaagaaagaaaaaaagtgatatCTAAGGGAATGCCTCTCCTTGTCTTTGACTTcacaggaaatgtttggttCCCTCTGTGACCTCACAGGAAGTGCCATACTCTCTTAGTGACCTCACAGGAAGCGTCACAATATGGAAATGCAACGCTGAGCTCGGTCCGTGAGCCCACAGGAAGGAAGGGTAATGAGGATTAAAGCATTGCGTTCTCTCTCCGCTACACCCCACCCCCCACTCTGTGTTGTAATCTCACCAAAAAACTGCAGCATGGTAGGTGGTTCATGACTAGGACAGCCATCCAACCTGTGTATATTGACATTagcatattattaatattattttgacAAAGTTGAAATTACATGGTTATTTTAAACTGCTTTTGCCAAAGAATGTTCAGTTGGCTTTGGTTAAGTTTGTTCATGCACTGTGTTCTGTTGCATTTTGTAAAATCACTCTGCTTTAGCCTACTTACACACTGGTCAGGAGGTGTCTGTTGTTATTCCCTGCAATGTttaactggtgtgtgtgtgtgtatgaaaggACTGATGTACGTCTCATTTTGTGCTGAACTTTCTATGACGTCTAGTCTGCTGAAAtgatttaaagacattttattcatttatatatatatttttgaaaaccACTAGGAGATGAGATGTGTTCTTTCTCCTGTCTTTTTCTCAGTCATGTCATGTGATTAAACCTGCTCATTCCACACTTAGACTAAGGCCCCGTTCACAAGTATCcggatatttttttataatgttttgtcCTCCTGATCCTGGGAAAACACCATTTTGGGTTTTGAAAACTGTTGGGGGgggggaatttttttttatgaaatcacaaaaactaaacaaaatgtgTTCATGTTTCTGGCTTAATCTCAAATCCTTACTCCCTATTTAGTGAACTACACAATGTATAAAACTACACCATCCACACGCAGATAGCACTAGATTTCAGATTCATttcaacatataaataaataaaagtaaatatgcttctattaaaaatatttaacactgcTGGAgttataaactctttttatgaCTTGTGTAGTACACTACAGAGGGAATAATGTGCAGTTTGTGATTTAAATATCTGGATACGTGCGGATGTAGCCTGATGGTAATTCAGTTACACTTACTGTGTGTCATTTTCTGACTAGCTTTGAACATTTCAGGATAATGCGATAAATATAAATGGAGGGTATTGCAAATCTGCTGCTGAACACAAGCTACTTTTATTGCCAGTTGAAGTGTTCAGTCTAGCTAGCCTAGTCACACTATCACACTATGAGGGGTTGGTTATTTCACTGTGTTATTGAGTCATTTGATATGGCAAgcggttttgttttttaagccatGAATGACACCAGCAAGTACAGTTTGCAATTTTAGAtgtctaaaatataattttacataGCAACtgattatattgtttatattcgaaagttttttttttatgacctcTAGTTACACATCATCCCAGCTAGCCAGATAGTAAGCTTAAATTGGTCTGCTGGCTCCACGGACTGTTCGTTCACTGACTGACTGGCATGGCTGGTCCACCCACAGACCACCCAAAtaagtttttaatgcatttcacACAAGATGTCACTAGTCACTAATCTTCAGATTTTAAATGCCtagaaacttttattttggaaaataaactaAAGATACTAAATACTACAACAACTAAGAAGAAAATAACGACTGGCTGGGTCACCAATTGCACGTATATACTAATTTTATTAGTGTGGATTTGGCAGGTTAGTAcaaaaaaattactaaaaaaatatgaagcATAGTTACTGCAGGTTTTGctgtccctgtttttttttttccccagtgaCTCCCTTTCCTTTACGCACTGTATTTAAGGATAGAAGTGAAATTTAGTTAATAATGGCAACCACcctgctaatttttttttaaaaagccctTGAATTGTTTGACCAGTTCTGGGTATGCTTTAATGAGCTTTGATAACATTTTTTGAGTCGAGTATATAGTATAGATAAAGTGTTAAGTAGTACACAATTAAGACACAGCTTAGGTCTGAAATAACCATATTTTGTTAAAATTGTTGTTGCTGGAACTGAAAATCAACCTAACAAATAAATGATAACTAAGAAATGAATGTGGATAGCCAGCTGTGCTAGGGATGTATCTATATATAAActacacaagtttttttttggagtaaaaATTGAGTTATGACTTGGTATTGCTGGTGTTATTTTAGGCTAAAACAGCTTGCTGTTGTTTTGAGTGCTCACTGTCTGTTtagcacattacacacattgtgACTAAATGCATCTATTAAGCTATGTTAACATTAATTCAAGTTATTCTTGGGTCCTTCcatcattttttgcattttattacaTGTACGGAATCTGACAAATATGGAATCATTCCATTCTACAGAAGGTTTCAGGCCTCTGCTCCGTCTGCCTTAAAATGCACTTCTGTTGGATCCAGTAGAGATAATCTTCATTGGTTAGCTGTCTGAAAATGCTAACGTCTCAATACATGCTTacattgctgctgttttttccCTGAGACTGATTGGCCTCCTGTTGTAACGTCTGTATCACCGGGCTAGTCTTTTGTAATGTTGCACCTCCATTGCTTAGTTTGCTTCATAAAACCTAAACTTAAGCAAGATAATCTAAACCTGCCTGCTCAGTCCGTcccttcgctctctctcttgtgaattttattttcactaggagaaaaagagagagaaaattttGTGGCTGTGTGGAGGCATTAGCGAAGTATGTGTACATTACTCTATTTAAAAATGGAAACTTGaagagtttgtttgtttaaaggcCAAATAGACAGACATATAGTGCCATAAAATGTTCGACTTGCTTACCACTAGTTTTACCGTATTTTAACTACCAGTCTAAACTGAttttcaataaatgttttttgttgctgGCCAGTCAAAATCCAGCTTTGTTGTTTTTCAGTAttatgcgtttttttttttttttggtggaacaTGGGTGGAAAAGCTCTCCAAAATCAAAAAGGGGTTAAAAAGTTCAGGCCTGGTAAGCCTGATGCAGAACGTGTCAATGAAAAGTGTTCTTCAGCAGTTTCTGTCCAAGGATGGCAACTGTATAGGTGGGATTCTGTTCTCATCTTCcctgtattgtttgtttgtttgtttttttgtctgtactTTAAGATGATGTAATGTTCTAGCCTTATTTAATTCACAAAGTGTACATTTCTTTGATCGAtggtctgttttttgtttgttttttgtaatgATGGCAGTGAAGGTTACACTGAGAGCTTTTGAATTTGTAAGACAAAAGGACGTTCCCTGTTATCGAATCAATCAGTATCTGTCTGAGGACGCTCTGCCCAGCCTATAGTGCAACATTCCGCCTAGAAAAGTATAAACTGAATctgaaataaaagtatatattataaaaca

Function

GO: NA

KEGG:

id description
K01415 ECE; endothelin-converting enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18212 lncRNA upstream 68706 25508205 ~ 25508449 (+) True G13565
TU18188 lncRNA upstream 174037 25401020 ~ 25403118 (+) True G13545
TU18187 lncRNA upstream 174160 25401020 ~ 25402995 (+) False G13545
TU18189 lncRNA upstream 174218 25401020 ~ 25402937 (+) False G13545
TU18153 lncRNA upstream 238315 25328176 ~ 25338840 (+) False LOC103040166
TU18246 lncRNA downstream 1270 25644013 ~ 25644363 (+) True G13589
TU18274 lncRNA downstream 56754 25699497 ~ 25703950 (+) True G13607
TU18275 lncRNA downstream 56754 25699497 ~ 25703950 (+) False G13607
TU18276 lncRNA downstream 56754 25699497 ~ 25702005 (+) False G13607
TU18285 lncRNA downstream 84564 25727307 ~ 25775610 (+) True G13612
XM_007236750.3 mRNA upstream 41185 25526943 ~ 25535970 (+) True trim50
XM_022675479.1 mRNA upstream 71111 25473577 ~ 25506044 (+) True LOC103044362
XM_007236747.3 mRNA upstream 108466 25411286 ~ 25468689 (+) True LOC103043872
XM_007236748.3 mRNA upstream 108466 25438350 ~ 25468689 (+) False LOC103043872
XM_007236743.3 mRNA upstream 176291 25382484 ~ 25400864 (+) False rffl
XM_022675520.1 mRNA downstream 18155 25660898 ~ 25673236 (+) True mfrp
XM_007236760.3 mRNA downstream 37655 25680398 ~ 25686643 (+) True LOC103047330
XM_007236761.3 mRNA downstream 37878 25680621 ~ 25686643 (+) False LOC103047330
XM_007236762.3 mRNA downstream 46311 25689054 ~ 25691155 (+) True LOC103047847
XM_007236764.3 mRNA downstream 50956 25693699 ~ 25698633 (+) True LOC103021785
TU18064 other upstream 521052 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 720133 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 859929 24714351 ~ 24717226 (+) False ccdc9
TU17747 other upstream 859929 24715890 ~ 24717226 (+) False ccdc9
TU17542 other upstream 1721802 23853998 ~ 23855353 (+) True G13067
TU18257 other downstream 26005 25668748 ~ 25673189 (+) False mfrp
TU18843 other downstream 1366805 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 2407386 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 3486324 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 3752417 29395160 ~ 29398166 (+) True G14480

Expression Profile