RNA id: TU39278


Basic Information

Item Value
RNA id TU39278
length 645
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G29279
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58862851 ~ 58863495 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaaagctcaccttccgcgaaaatccgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccgttgtctgcaggagctaagcaaagaaatcccccctccgaaaaacgggtgaattttgaattatctttctgcctacctaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggtggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtccattaaaaaagagctatacagagacacctgagcactttttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacagaaggtgagctttaaaaaatggtatccaacaaaagtgagtacacacgtcacatttttgcaaatattaTTTGATATTATCTTTTCATGGTACAGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39266 lncRNA downstream 11500 58848687 ~ 58851351 (-) True G29270
TU39268 lncRNA downstream 11500 58848687 ~ 58851351 (-) False G29270
TU39253 lncRNA downstream 42998 58818634 ~ 58819853 (-) True G29260
TU39248 lncRNA downstream 81777 58780689 ~ 58781074 (-) True G29255
TU39247 lncRNA downstream 82301 58780204 ~ 58780550 (-) True G29254
TU39290 lncRNA upstream 24623 58888118 ~ 58888409 (-) True G29291
TU39359 lncRNA upstream 135048 58998543 ~ 59036129 (-) False LOC103023855
TU39393 lncRNA upstream 268046 59131541 ~ 59132137 (-) True G29369
TU39394 lncRNA upstream 269916 59133411 ~ 59133672 (-) True G29370
TU39431 lncRNA upstream 373002 59236497 ~ 59243835 (-) True G29393
XM_007258168.3 mRNA downstream 268925 58582728 ~ 58593926 (-) True LOC103031445
XM_007258171.3 mRNA downstream 360320 58498747 ~ 58502531 (-) True LOC103032305
XM_007258172.3 mRNA downstream 367393 58485608 ~ 58495458 (-) True LOC103032621
XM_007258175.3 mRNA downstream 444005 58417381 ~ 58418846 (-) True LOC103033450
XM_007258176.3 mRNA downstream 452270 58407436 ~ 58410581 (-) True LOC103033774
XM_022663672.1 mRNA upstream 71397 58934892 ~ 58942197 (-) True LOC103037326
XM_022663682.1 mRNA upstream 84158 58947653 ~ 58952885 (-) True LOC111189957
XM_007256627.3 mRNA upstream 113167 58976662 ~ 58996762 (-) True ccm2
XM_007256626.3 mRNA upstream 113167 58976662 ~ 58996757 (-) False ccm2
XM_007256628.3 mRNA upstream 113167 58976662 ~ 58985709 (-) False ccm2
TU39086 other downstream 688147 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 2168726 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 3046253 55815872 ~ 55816598 (-) True G28536
TU38270 other downstream 3255965 55602870 ~ 55606886 (-) True G28501
TU39330 other upstream 69468 58932963 ~ 58934789 (-) True G29317
TU39539 other upstream 574105 59437600 ~ 59438298 (-) True G29478
TU39714 other upstream 1294043 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 1505551 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 2969953 61833448 ~ 61887888 (-) False LOC103043586

Expression Profile