RNA id: TU39393


Basic Information

Item Value
RNA id TU39393
length 597
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G29369
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59131541 ~ 59132137 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atacccctcgctgcagaaccacaagtccagggggtggggctggatctgatccaactcttcctacgtcgtgttttcattggtctgaAGCAGATCGGACTCTTCCCCATCCGGTTTTACTCACTCGCCTTTCGGAGTCAAGTAAACAATCACGAACGgggaagaggagaaagaaaaaatataaataacaatctGGCAGTAACAACATCCTCATTCTATACTCTCAGTGTACTGGGCATTTTTCCAAGCTCTTTGGAAAATTATACATCGTTACACTCTTTTTATAGAACTCTGTTTTTTGTTCGCCATTTTGATTGtgtattaatatctgtaataataaatgaacatggtagctggtagataagacactcattggcatcctttattttaattatttattttttattttgtctttaggccctttttattaaagataaaaaatgaaatagttaatatttatataggaaatgtacagcattttattatgtttgtaatcacagacatgttccttcttttaaatctgtattgtgtgatttaaatgtgctacgtagcaaataacattttccaggatttATTTGATAAGATAAAAGTCCTGGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39359 lncRNA downstream 95412 58998543 ~ 59036129 (-) False LOC103023855
TU39290 lncRNA downstream 243132 58888118 ~ 58888409 (-) True G29291
TU39278 lncRNA downstream 268046 58862851 ~ 58863495 (-) True G29279
TU39266 lncRNA downstream 280190 58848687 ~ 58851351 (-) True G29270
TU39268 lncRNA downstream 280190 58848687 ~ 58851351 (-) False G29270
TU39394 lncRNA upstream 1274 59133411 ~ 59133672 (-) True G29370
TU39431 lncRNA upstream 104360 59236497 ~ 59243835 (-) True G29393
TU39464 lncRNA upstream 192856 59324993 ~ 59325712 (-) True G29417
TU39541 lncRNA upstream 310642 59442779 ~ 59443002 (-) True G29480
TU39558 lncRNA upstream 374789 59506926 ~ 59528674 (-) False snx17
XM_007256629.3 mRNA downstream 45655 58998541 ~ 59085886 (-) True LOC103023855
XM_007256627.3 mRNA downstream 134779 58976662 ~ 58996762 (-) True ccm2
XM_007256626.3 mRNA downstream 134784 58976662 ~ 58996757 (-) False ccm2
XM_007256628.3 mRNA downstream 145832 58976662 ~ 58985709 (-) False ccm2
XM_022663682.1 mRNA downstream 178656 58947653 ~ 58952885 (-) True LOC111189957
XM_007256640.3 mRNA upstream 226690 59358827 ~ 59434313 (-) False LOC103026850
XM_007256641.3 mRNA upstream 226690 59358827 ~ 59434312 (-) True LOC103026850
XM_007256643.3 mRNA upstream 313374 59445511 ~ 59486743 (-) False LOC103027424
XM_007256642.3 mRNA upstream 313374 59445511 ~ 59486743 (-) True LOC103027424
XM_022663793.1 mRNA upstream 375104 59507241 ~ 59552910 (-) True snx17
TU39330 other downstream 196752 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 956837 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 2437416 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 3314943 55815872 ~ 55816598 (-) True G28536
TU38271 other downstream 3525259 55602870 ~ 55606282 (-) False G28501
TU39539 other upstream 305463 59437600 ~ 59438298 (-) True G29478
TU39714 other upstream 1025401 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 1236909 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 2701311 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 4078144 63210281 ~ 63288108 (-) False fryl

Expression Profile