RNA id: XM_022682450.1


Basic Information

Item Value
RNA id XM_022682450.1
length 1783
RNA type mRNA
GC content 0.46
exon number 16
gene id utp3
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15506398 ~ 15517440 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTGTGCGCATGCGCGTGTTGGTAAGCGCGTGGAGCTGTGTGGCTGTGCTTAGTGTGTTTACtgattttactgtgtttatatgatttaatatatttaatatagaaatatattattatacagcaGATCTTCAGTTTGTAATATAAAGCGCTGAGGAGCGGAGAGCAGCATGGTGAGAGCTAAAAGGACGGTGCGAAGGCCGAGAGTGAAGCGAGTGGAGGAGTACGACAGTGATGATcctgcaaaatataaaaatgaagatGTTCCTGATAAGaaatCTTTAAAGTACACAGAAGATAAAGTAGATGAATTCCACAACAAAACCATCTCTAAGCTGTTGGCGCGTGGCGTACGGACAGATAATGATTATGAAGATGAAGCGGACGAGGAAGAGGTGATGCCCCTGACACTACAAGATtcagatgatgatgaggatgatgaagaagaggacggtgatgatggtgatgaagagGGAGAGACGGATATGGAGAGTGATTTGGAAGGGAAAAAGGATGACGATCTGCCGAATGCCATGGCCTGGGGGAGCAGGAAGAATGCTTTCTATGATTCTGACTATACGACTACGAAGAAGAAATCGTTGGTGGAGATGGAAGCAGAAGataaggaggaagaagaggaagctAAAAGCATTCAGAGACGACTTGCAGCCAACCTGAGCGAGGAAGACTATGATCTGAATCTGCTGCAGGAGTTTGCGGTGGAGGCTGAAGATGAGCAGACGGAGGAGAGCGGAGAGAAACAGCAGAGGATTGAGAAGGACCTGGATCAAATGTCTCAGAAGGAGAAGCTGAAACTGCTGAAGAAGGAATCTCCTGAGTTACTGGAGCTCATTAATGACTTTAAAACTAAGctgAGTGAACTGAAAGACGAGATCCAGCCGCTGGTTCAGATGGTGAAAGATGGTAAAATCCCTGCAGGAAAGGGGGCGAATTATCTCATAACCAAGCAGCAGCTTTATCTCAATTACTGCACAAATATAAGCTTCTACCTGGTTTTAAAAGCCAAGAGGATTCCAGCTCATAACCATCCGGTGATCGAGAGACTGGTGACCTACAGAAACctaATAAATGAGTTAGCAGCGGTTGATGCTAAACTGGCTCCTCAGCTGCGGGAGCTTCTTTCTGGACACGAACAAGAGAGAAGATTAACCAAGAGTAAACAGACCAGCAGGAGCAAGGTATCTGAGGCTGTAGGCGTGGAGGAGGCGGAGTCGTCGGACTCGGATGAAGAAGCTGCTCTGCGTTTCTATAAAGGAATCGAGGCGAGACTGAAACTGAAGAGGAAGAATAAAGACCTGCAGGACGGCGGGTTATCCACAGCCAAGGAGGACCAGGAGGAGGAGGCTGAGATGGACGGAGATGCTAAAAGAGGAATCACCTACCAGATGGCGAAGAATAAAGGACTCACCGCCAAGAGGAAGAAGATCGACCGCAATCCACGagttaaacacagagagaagtACAGACGCGCCAAAATCCGCCGCAAGGGTCAGGTTCGTGAGGTTATGCGTGAGGAGACGAGATACAGCGGAGAACTCTCTGGAATTCGGGCTGGAGTTAAGAAGAGCATCAAACTCAAGTGATCAGAGCAAAAACAGCGTCCAGTTCCAGCGCAGAACGATTTTAATCTCTGAAATCGGGGAAGAAACTCTGATTTTAGTGTTCACAAAATGTGTACAATATGCTAATGATATGCTAATGATGTTCGTCATTGTTGATAAAATGATCACATCCATTAAAGCTTCAGAAAACGTGTTCTTTTAA

Function

GO: NA

KEGG:

id description
K14767 UTP3, SAS10; U3 small nucleolar RNA-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257642 lncRNA upstream 34862 15446216 ~ 15471536 (+) False G190068
TU257641 lncRNA upstream 34862 15468160 ~ 15471536 (+) True G190068
TU257640 lncRNA upstream 60633 15445120 ~ 15445765 (+) True G190067
TU257636 lncRNA upstream 83116 15420295 ~ 15423282 (+) True G190063
TU257625 lncRNA upstream 137841 15367806 ~ 15368557 (+) True G190052
TU257662 lncRNA downstream 59642 15577082 ~ 15577971 (+) True G190086
TU257660 lncRNA downstream 80712 15598152 ~ 15603903 (+) True G190085
TU257665 lncRNA downstream 116450 15633890 ~ 15634659 (+) True G190089
TU257669 lncRNA downstream 152235 15669675 ~ 15722294 (+) True G190091
TU257684 lncRNA downstream 247713 15765153 ~ 15766268 (+) True G190104
XM_007239907.3 mRNA upstream 155432 15328235 ~ 15350966 (+) True LOC103025870
XM_007248320.3 mRNA upstream 435194 15062746 ~ 15071204 (+) True slc2a10
XM_015605591.2 mRNA upstream 435194 15062747 ~ 15071204 (+) False slc2a10
XM_007248318.3 mRNA upstream 492518 14988757 ~ 15013880 (+) True LOC103041453
XM_022682430.1 mRNA upstream 492518 14988761 ~ 15013880 (+) False LOC103041453
XM_022682452.1 mRNA downstream 10870 15528310 ~ 15688721 (+) True foxj3
XM_007233857.3 mRNA downstream 193490 15710930 ~ 15718555 (+) False map1lc3a
XM_022682458.1 mRNA downstream 268006 15785446 ~ 15796142 (+) True LOC103032686
XM_022682457.1 mRNA downstream 268008 15785448 ~ 15799936 (+) False LOC103032686
XM_022682861.1 mRNA downstream 285179 15802619 ~ 15810026 (+) True LOC107196954
TU257621 other upstream 141398 15362692 ~ 15365000 (+) True G190050
TU257060 other upstream 1398290 14107302 ~ 14108108 (+) True G189621
XR_002651609.1 other upstream 2079333 13415069 ~ 13427065 (+) False LOC103033837
TU256538 other upstream 2509494 12995672 ~ 12996904 (+) True G189268
XR_002651607.1 other upstream 2961297 12530547 ~ 12545101 (+) False usp48
TU257667 other downstream 193511 15710951 ~ 15721041 (+) True map1lc3a
TU257668 other downstream 193511 15710951 ~ 15757181 (+) False map1lc3a
TU257697 other downstream 260365 15777805 ~ 15779836 (+) True G190109
TU258100 other downstream 1357968 16875408 ~ 16877838 (+) True LOC111195387
TU258260 other downstream 1602505 17119945 ~ 17123674 (+) True G190481

Expression Profile