RNA id: TU257641


Basic Information

Item Value
RNA id TU257641
length 3331
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G190068
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15446216 ~ 15471536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAAAGTAAAGCAAcatttacaaacaaacaaataaaagaggGAGAAAATCAGTAAAGGTTCAACAGAGtcgatgttttatttttacttgaaaaaataaagggaacatgCCTGAGAACATGAGAGTCAAGAAATGAGAAAAATCAATCAGATAAAGAATAAATCGATgtgaaaaagaaggaaaagcTGCTCTATAATTCAGCAGTGGTGTAAATTCAGCCTGAACAAAACTTCCCttcaacagaaataaaaaattaatatatcaTTAGCCCTCTGCTATGGTCCCATAAGGCTTACTGTGATCATTAAAGTGTTAATATCCTGCATTTAAACTTTTTGACACACTGATCTTTAATAATAAGGCATAAAAAAAGCAGACGGCTGCATATTTGGCAACTTACGTGATGTGCATCAATCAATGTGCTGTTAGTTTGCATAAAGTTTAACAAACATTCATTAAGTAAGAGTGCAAtcccacacacatatattatatttaggcctgtcacaataaaaatgttctgtggacgatatattgtcccagaaattattgcgatacacgatattcttgtaattttaagactaatAAATGCAATTGATAAAATGATAACAGAACAGCATAAAGAAGTAATAATACACTTTTTCAAGAATTAATCATtcattataattagtttgggaattatatacttatttcttcacctactttagtcctcACAGTGTGTATGTAGTCAGAGTTATTGCAGCATGActgactaaaatactgttcactgttattcatgtgaacaaacatacaaacaaacacaatagacgatatcacaaTTATCTAACattattgtgacagacctattTCTATTATATCCAGCATACCTACATAATTTAGGATTGTCTAGTTACGTAAAcaatttaagcattttaaatgttttcattatTCTTTTGTTGCAATcgaacaatacaaaaataaagtggCTGTTAATTCCATTCCAAAAAAATAACTGCATTATTTTTCTATAAGGCATTCATAAAGCATGATCTTTAAATTGAACCTATTCACTATAGATAGCTAGTGCAGATAGCATAACTATATTACGCTCATCACGACTACAAAGtgcgaaagaaagaaagaaagaaatgcgagttaaatagatatattttgCGTCTAACAAACttgtacacttttttttttttttttttacacaattttataGAGAAAATCAGACCTGAATCACAGTGGATGATCTGTCCGTACACTCAGTACACtagttttagatttagattattcTCTTACTTTAGGTGGGATTTTGGTGATTTGTGTAAAAAATCTTCTATTAATCAGAAAGTTATTGATTTTCACAATAATCCAACTGCAAAAGAGCAAAACTGCAATAGAAATTAAACATGGAATTAATTGTCTAAAGCTACACAGATAAAACACGCTGTATTTCTGACAGTAAAAGGCTGGAAGTGATTGTGAATACTgataatgtgtaaataaatggCTTTGTGGGTGCAGATGTGTAACAGGCTAatatagtggctcaaattctgcccccctttacacacatctggagattttttttgggaaaaaatcaTTCCTAAAGCAGCGTTTCTGAAAATCTCTCGATTAACAcgacaaagcaaacaaaaactCTAAAGAGCTCTAAAACAGCATGCACGCTATCCCAGCGGAGGAGCGAACACAAGTCCTCAACATAAAGTGTAACGTCCAAAATAGACCTAAATACAGCACAGATTTTTACACTCAAAATTCAATTATCGCAATATATCATATCGATAGGCTTTCATTTGCGATACTTATCAATATCCATACATACAGTCAAatactgttatatatttattgaaacatagtcGCTTCTTTTTTCActtggtggcgctataatctaATTAACAGGGTTAATAAatctgtggtgaagaatatcgGTTGTAAAATTGTGTGAATCtgaaacaccaataaatccatatttgcttgtatttgattatttaggagtattttatcctcttcagaaacacagatggtgtgaagtatcgtagagaaatgtattgtgatatcgCTATCATGATATTGTACTGCGATAATCTCGTATTGTAATATCGTTATCGTAATTTCACATTGCGATATTGCATTGCAAATCATATTGTGATTAATATCACACTGCAATAACATTGTATCACATTACCTTACTGCAataatatcgtattgtgataacattacatgatacattgtattGTGACAATCttgtatcgtgataatattgtgatactgtgatcacctgtgagaaaaaaaaacgcattaTTGAGGGAAACGCCACCATCTCTAAATCACTTTCACAGAAATAAAAGATAGGTttagttattttgagatgttcTATCGCTCTATCAAAGTTTTTAATCAGAAACATGTGTCgtagttattgtgttattgttatCGCTTTGATaaacaacatttataaaacacttctagTTTTCAGTGAcctaaaaataaagtgtttctcTGAACTGAGAagacagaaaacacaaaaataacttttataaaaaaaatatcctgatatatgtgtgtgtgggcgggGCCTCATTTTACAATATGTGCGCATCATTTAACAGTACTGATAACAGTGAAtaagaaaaatatgtaaaatatttccataaataatgtctcaacttatgaatatttattaaCTCTAGTTaagaaattattaaacattactaaaaattttaatgtttaagaatgtagtaaataataatactgaATTGAGACCTGTTGGTTAAttagtactgttaattaatgcacACTTACTGTAAAGAGTAACATATgaattatagattatagattagaGCATTATTTTATAGAGATTATAGGTGTTTAATGGAATGTGGATGATTTAATCATTTGGATTGAAATTTAACTTCTCCAGTTACTGTAGAATTACTGTAGAATTACTGTAAACTGCActgaaaaatccaaaaataacaaaaataatcattttgacTCAGAAAAACACCCAGGCATGCTTTTGAGAAGCAAAGATAAAGCAGAGGATtggtaaacacaaacacagtcagataaaataaactgacatatttataaaaatatggcCCCTAAACTTTAAGGTTATGTTGGCATGCATAACTGGCGTAATCTGAAATATATAGGCAACAGTAAAAATCTTAATAAGCGTTTCTCCCTCGTGTCCCGGTGATGAATCTCCCTCTATTTACTGGGAGCAGGAGGATTAACCGGGATGATGTTTCTCATCTTAAAGTAGGAAACCAGCTGACCGGGAACCTCAGCTAGAACTGTCTGAGCCAGAGCTTCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257640 lncRNA upstream 22395 15445120 ~ 15445765 (+) True G190067
TU257636 lncRNA upstream 44878 15420295 ~ 15423282 (+) True G190063
TU257625 lncRNA upstream 99603 15367806 ~ 15368557 (+) True G190052
TU257612 lncRNA upstream 111330 15352985 ~ 15356830 (+) True G190041
TU257605 lncRNA upstream 145926 15318697 ~ 15322234 (+) True G190037
TU257614 lncRNA downstream 18535 15490071 ~ 15520066 (+) True G190043
TU257662 lncRNA downstream 105546 15577082 ~ 15577971 (+) True G190086
TU257660 lncRNA downstream 126616 15598152 ~ 15603903 (+) True G190085
TU257665 lncRNA downstream 162354 15633890 ~ 15634659 (+) True G190089
TU257669 lncRNA downstream 198139 15669675 ~ 15722294 (+) True G190091
XM_007239907.3 mRNA upstream 117194 15328235 ~ 15350966 (+) True LOC103025870
XM_007248320.3 mRNA upstream 396956 15062746 ~ 15071204 (+) True slc2a10
XM_015605591.2 mRNA upstream 396956 15062747 ~ 15071204 (+) False slc2a10
XM_007248318.3 mRNA upstream 454280 14988757 ~ 15013880 (+) True LOC103041453
XM_022682450.1 mRNA downstream 34862 15506398 ~ 15517440 (+) True utp3
XM_022682452.1 mRNA downstream 56774 15528310 ~ 15688721 (+) True foxj3
XM_007233857.3 mRNA downstream 239394 15710930 ~ 15718555 (+) False map1lc3a
XM_022682458.1 mRNA downstream 313910 15785446 ~ 15796142 (+) True LOC103032686
XM_022682457.1 mRNA downstream 313912 15785448 ~ 15799936 (+) False LOC103032686
TU257621 other upstream 103160 15362692 ~ 15365000 (+) True G190050
TU257060 other upstream 1360052 14107302 ~ 14108108 (+) True G189621
XR_002651609.1 other upstream 2041095 13415069 ~ 13427065 (+) False LOC103033837
TU256538 other upstream 2471256 12995672 ~ 12996904 (+) True G189268
XR_002651607.1 other upstream 2923059 12530547 ~ 12545101 (+) False usp48
TU257667 other downstream 239415 15710951 ~ 15721041 (+) True map1lc3a
TU257668 other downstream 239415 15710951 ~ 15757181 (+) False map1lc3a
TU257697 other downstream 306269 15777805 ~ 15779836 (+) True G190109
TU258100 other downstream 1403872 16875408 ~ 16877838 (+) True LOC111195387
TU258260 other downstream 1648409 17119945 ~ 17123674 (+) True G190481

Expression Profile