RNA id: TU257660


Basic Information

Item Value
RNA id TU257660
length 523
lncRNA type intronic
GC content 0.39
exon number 2
gene id G190085
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15598152 ~ 15603903 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttagtttttttcacttagcttagcttagctttacactgctgaaaaagaaaaaaaaatgtatggccttatgtatgaaaatagatcaaaCTGTAGAGTATTTATGTGTTAGAGTAGttaactgtgtttaatgtttgcGTTTAATGGACACAGGACTGCTGTTCTCACGCGCTgcaagtcccacccactttgAAATCTCATTGGCCTACTAAGCATGaggagaggccaatcaggaCGCTCAGGATTTATAACTCACACTGTGTGTCTGTCTTACTCTCTCGCCCTTTTTACCCTTTTATGCACTCTCTTTTTCCATCACACATTAACAACACGTTGCCGATGAAATTCTGCATCTACAGTTTTTTTGTCGCCGTTGCCGATTACGcagactaatcattgcagccttACTTTTTAACATTGAGGAGAATGATCAGGTCCAGGTTGTTAAATGATGGTTTGTATGTTTTAATGCTTGTATGTTTCTGATGCTGATGTCTGTAAATGCCTAAACAATAGAGCATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257662 lncRNA upstream 20181 15577082 ~ 15577971 (+) True G190086
TU257614 lncRNA upstream 78086 15490071 ~ 15520066 (+) True G190043
TU257642 lncRNA upstream 126616 15446216 ~ 15471536 (+) False G190068
TU257641 lncRNA upstream 126616 15468160 ~ 15471536 (+) True G190068
TU257640 lncRNA upstream 152387 15445120 ~ 15445765 (+) True G190067
TU257665 lncRNA downstream 29987 15633890 ~ 15634659 (+) True G190089
TU257669 lncRNA downstream 65772 15669675 ~ 15722294 (+) True G190091
TU257684 lncRNA downstream 161250 15765153 ~ 15766268 (+) True G190104
TU257707 lncRNA downstream 206642 15810545 ~ 15815166 (+) True G190116
TU257722 lncRNA downstream 242623 15846526 ~ 15847008 (+) True G190125
XM_022682450.1 mRNA upstream 80712 15506398 ~ 15517440 (+) True utp3
XM_007239907.3 mRNA upstream 247186 15328235 ~ 15350966 (+) True LOC103025870
XM_007248320.3 mRNA upstream 526948 15062746 ~ 15071204 (+) True slc2a10
XM_015605591.2 mRNA upstream 526948 15062747 ~ 15071204 (+) False slc2a10
XM_022682430.1 mRNA upstream 584272 14988761 ~ 15013880 (+) False LOC103041453
XM_007233857.3 mRNA downstream 107027 15710930 ~ 15718555 (+) False map1lc3a
XM_022682458.1 mRNA downstream 181543 15785446 ~ 15796142 (+) True LOC103032686
XM_022682457.1 mRNA downstream 181545 15785448 ~ 15799936 (+) False LOC103032686
XM_022682861.1 mRNA downstream 198716 15802619 ~ 15810026 (+) True LOC107196954
XM_007233855.3 mRNA downstream 234554 15838457 ~ 15844270 (+) True LOC103030596
TU257621 other upstream 233152 15362692 ~ 15365000 (+) True G190050
TU257060 other upstream 1490044 14107302 ~ 14108108 (+) True G189621
XR_002651609.1 other upstream 2171087 13415069 ~ 13427065 (+) False LOC103033837
TU256538 other upstream 2601248 12995672 ~ 12996904 (+) True G189268
XR_002651607.1 other upstream 3053051 12530547 ~ 12545101 (+) False usp48
TU257667 other downstream 107048 15710951 ~ 15721041 (+) True map1lc3a
TU257668 other downstream 107048 15710951 ~ 15757181 (+) False map1lc3a
TU257697 other downstream 173902 15777805 ~ 15779836 (+) True G190109
TU258100 other downstream 1271505 16875408 ~ 16877838 (+) True LOC111195387
TU258260 other downstream 1516042 17119945 ~ 17123674 (+) True G190481

Expression Profile