RNA id: TCONS_00011795


Basic Information

Item Value
RNA id TCONS_00011795
length 1671
RNA type mRNA
GC content 0.53
exon number 7
gene id XLOC_005966
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24022963 ~ 24056275 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCGGAGGGGCTCGGCAGAGCAGACTGGATGCCGGATTGGACTCTTTTTAAGGAGGTCATTTGCATGCCGAAGCTCGCCGGGTGTAGCAGCTCAACGTCGGGACTGACAAACGATGGCGGAGTGTGGAAGGAGGGGACTGTCGCTGCTCGAGGAGGCGCGATCTCGCTACGAGAGCCTGCAGATTTCCGATGATGTGTTCGGGGAGTCAGGCGACGACAGCAGCGAGAACCCCTTCTACAGTACCACCGGAGACTCCAATTCGGATAACTACCCGGAGACGAATGCGGACGATGCGAGAGTCAATGAAACTCGAAGTCAGAGCTGCGTTCCTCCCGGCTCTGTGTCTAGCGGGCAGGCGCAGGAGGAGGGATGGGGCGATACGCTGCGGGACCTCAGCCTGCCTCACTACCAGGACACGCACGGTCCAACACAGAAAATGTCAGCCACCGCTACAGCCATGGACTTCTTCCAGCTGTTTGTACCGGACAACGTCATTCAGAACATGGTGACCCAGACCAACATGTATGCCAAGAAGTTCCAGGAGCGTTTCGGCAGTGATGAAGGCTGGACCAACGTGACACTTGCAGAAATGAAAGCATTTCTAGGCTACGTTACATCTACTAGCGTGAACCGCTGTGAGTCGGTGTTAAGCATCTGGAGCAGTGGTTTCTTCAGTAACCGCAGCATCGCGCTCAAAATGAGCCAGGCGCGCTTCGAAAAGATCCTCAAATACTTCCATGTTGTAGCCTTCCGCTCCAGCCAGGGTGGCAGTCAAGGCCTCTACAAGATCCAGCCCTTCCTGGACTCTCTTCAGCAGAGCTTCAGCTCTTCCTTCAGGCCCTCGCAGACACagGTCCTCCACGAGCCCTTGATTGACGAGGATCCCGTGTTCATCACCACATGTACAGAGCGAGAGCTGCGcaagaggaagaagaggaagtTCAGCCTGTGGGTTCGACAGTGCAGCTCCACTGGCTTCATCTGTCAGATCTATGTCCATCTGAAAGAAGGTCCTGGTCCAGATGGTTTGGACACGCTAAAGAACAAACCGCAGCTTCACAGTCTGGTGGCCAAACAGCTCTGTCAGAATCTGGCCGGCCGCAATGCCATCATCTTCACTGGACCGAGCATCACGAGTCTAAACTTGTTCCAAGAGTTTGAGAAACAGGGCATCTACTGCTGCGGGCTGCTGAGCATCAGGAAGAGTGATTGTACAGGCCTTCCACAGTCAATGCTGATCAATACAGAGGCTCCACAGCAGCGTGGCCAGTCTCATGTTAAGATGAGAGGAAATATGTCCATAATCAACTGGTACAACAAAGGCAACTTCAGGTTTCTCACTAATGCCTACTCTCCTACTAAAGAAGGTGTGATCATTAAGAGGAAGAGTGGAGAAATCCCATGTCCCCTTGCTGTGGAGGCCTTCGCTGCACACCTGAGTTACATCTGCAAATATGATGACAAGTACAGCAAGTATTTCATTTTCCACAAGCCCAATAAGACCTGGCAGCAAGTGTTCTGGCTGACCATCAGCATTGCCATCAACAATGCCTATATCCTCTACAAGATGTCAGACGCCTACCACGTTAAGCGCTACAGTCGAGCGCAGTTCGGCGAGAGGCTGGTCAAAGAGCTTCTGGATATGGACGACTGCTCACCCACTCAATGA

Function

GO:

id name namespace
GO:0098038 non-replicative transposition, DNA-mediated biological_process
GO:0005634 nucleus cellular_component
GO:0004803 transposase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-229 Predicted to enable transposase activity. Predicted to be involved in non-replicative transposition, DNA-mediated. Predicted to be active in nucleus. Orthologous to human PGBD5 (piggyBac transposable element derived 5).

Ensembl:

ensembl_id ENSDART00000028285

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013597 lncRNA upstream 612453 23388493 ~ 23410510 (+) False XLOC_005959
TCONS_00013598 lncRNA upstream 612453 23389975 ~ 23410510 (+) True XLOC_005959
TCONS_00011784 lncRNA upstream 782386 23227531 ~ 23240577 (+) True XLOC_005957
TCONS_00011783 lncRNA upstream 787387 23227531 ~ 23235576 (+) False XLOC_005957
TCONS_00011781 lncRNA upstream 811989 23195965 ~ 23210974 (+) False XLOC_005956
TCONS_00013599 lncRNA downstream 514345 24570620 ~ 24572928 (+) True XLOC_005975
TCONS_00013600 lncRNA downstream 541390 24597665 ~ 24598245 (+) False XLOC_005978
TCONS_00011811 lncRNA downstream 541390 24597665 ~ 24649939 (+) False XLOC_005978
TCONS_00013397 lncRNA downstream 541436 24597711 ~ 24649939 (+) True XLOC_005978
TCONS_00011814 lncRNA downstream 619549 24675824 ~ 24677020 (+) True XLOC_005980
TCONS_00011794 mRNA upstream 27087 23988442 ~ 23995876 (+) True XLOC_005965
TCONS_00011793 mRNA upstream 121231 23897975 ~ 23901732 (+) True XLOC_005964
TCONS_00011792 mRNA upstream 139986 23843712 ~ 23882977 (+) True XLOC_005963
TCONS_00011787 mRNA upstream 287712 23669659 ~ 23735251 (+) False XLOC_005961
TCONS_00011796 mRNA downstream 206774 24263049 ~ 24276104 (+) False XLOC_005967
TCONS_00011797 mRNA downstream 206865 24263140 ~ 24277532 (+) True XLOC_005967
TCONS_00011798 mRNA downstream 222746 24279021 ~ 24284442 (+) False XLOC_005968
TCONS_00011799 mRNA downstream 224105 24280380 ~ 24284145 (+) True XLOC_005968
TCONS_00011800 mRNA downstream 230818 24287093 ~ 24294103 (+) False XLOC_005969
TCONS_00011791 other upstream 201663 23821186 ~ 23821300 (+) True XLOC_005962
TCONS_00011768 other upstream 1150546 22863545 ~ 22872417 (+) False XLOC_005952
TCONS_00011748 other upstream 1420397 22555938 ~ 22602566 (+) False XLOC_005943
TCONS_00011749 other upstream 1440483 22571943 ~ 22582480 (+) True XLOC_005944
TCONS_00011743 other upstream 1473152 22480857 ~ 22549811 (+) False XLOC_005942
TCONS_00011801 other downstream 231448 24287723 ~ 24290238 (+) True XLOC_005969
TCONS_00011821 other downstream 772478 24828753 ~ 24828869 (+) True XLOC_005984
TCONS_00011850 other downstream 1387709 25443984 ~ 25444370 (+) False XLOC_005997
TCONS_00011851 other downstream 1388009 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011863 other downstream 2647622 26703897 ~ 26709399 (+) False XLOC_006010

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_12872801_12891084.mRNA True 2496 mRNA 0.45 7 CI01000012 12871862 ~ 12891084 (-)