RNA id: TCONS_00011916


Basic Information

Item Value
RNA id TCONS_00011916
length 1352
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_006038
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28785814 ~ 28796637 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAGTACACTTCCTCCTGCTCCCGCGAAAATTTCACCGTTGATGTAAATGCCGAAccttaatgtttttaaagtttAAAACCAACCAGAATCACTGAAGATGTCTGATTCAAGGAGAAGGTCCCGGGGGAATCAAGAGGAACCAGGAGGGTCAACCAATGGAGTGGGTGGACAGAACCGGCCTGAGAGATCGGGCGATGTGGGTGATGAAGATGATATTGGTGGCGGACCCTCTGGTATTAGTCAGGAAGATGATGATCCTTCACGCAGAAGAGAGATCAGGAGCAAATACAGGGACCTGATTAATGAAGTTCAGCAAAATCGCGAGGACATGTTGAATCCTGCTAACAATAAACTCACTGATGTTTTGGAAGAGGCCAACAAACTTTTTGCCAATGTGAGACAAGCTCGTGAAGCAGCTCTAGACGCTCAACTCTTGGTACTAGCCACTGATCTAGGGAAGGAGAAGGCCAGCCAGCTACATGCTGAAGGCTCTTCATTTGACCCATCTGCATTTGCAGAACATTTGTTGTCCTTTATGGATCTGAATCGTTTGGAGGATGAAAGTGGTACGGATGGAAACTTGGGGGGTTATTTACCAGGAGGAGCCTGGCTTAAGCTTGCAAAGAGAGCTGAGAACTGCTTTAGAACAGCCCCGGCTTTCCACTACATGTTGGGCTCATTTTTGGCAGAGCCTCCTCCTCCACGGCAGAGAGTTGAAAGGCAAAGAAGAGTGCCCAGCAGAGAGGAGAAACGGATTATGCCCACCCAGCTGAAGAAAATGGAAGAATCTCACCAGGAGGCAACTGAGAAAGAGGTGGAAAGGATTCTTGGATGTCTGCAAAGATACTTTAGAGATGACTCCGAGGAGCCCATTTCATATTACGAGTTCGTCATCGACCCTAACTCCTTCTCACGAACGGTGGAGAACATCTTCCACATGTCTTTTCTAATTAGAgATGGTCTGGCGAGGATGTACTTGGAGAATGGGCTTCCTTATATAGCTCCAGTAGAGGAAGGTGAGATACAGCCTGGTGGCGCTGCCATTCGACATCAGTGTGTCATCTCGATCAGCCAGGAAAGCTGGAGGGAAATCATTGATGCCTTTGACATAAAGCAAGCTCTCATCCCACCTCCATGAGCTTGGTCGCAGGAGGTCAAAAATGCCAATGACATctgtttgtaaaataaaaattgtgaaattttttatatttttaatgttttggatAGAAATTTTAAGAGTTACATATTTGGATTTTGTATTAACTGTAATAGTTGTGTTTAATACAACAAATGTAAAGcgaaattaaattttattgtgtTGAATGcaataaatttaaagtaaaactgAA

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:2001022 positive regulation of response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-111 Predicted to be involved in DNA repair. Predicted to act upstream of or within DNA recombination and cellular response to DNA damage stimulus. Predicted to be located in chromosome, telomeric region. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin bud. Orthologous to several human genes including NSMCE4A (NSE4 homolog A, SMC5-SMC6 complex component).

Ensembl:

ensembl_id ENSDART00000039028

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013617 lncRNA upstream 210355 28572106 ~ 28575459 (+) True XLOC_006029
TCONS_00013616 lncRNA upstream 218328 28565179 ~ 28567486 (+) True XLOC_006030
TCONS_00013615 lncRNA upstream 218798 28565179 ~ 28567016 (+) False XLOC_006030
TCONS_00013403 lncRNA upstream 302408 28475601 ~ 28483406 (+) True XLOC_006027
TCONS_00011892 lncRNA upstream 371255 28407070 ~ 28414559 (+) False XLOC_006025
TCONS_00013618 lncRNA downstream 11455 28808092 ~ 28817565 (+) False XLOC_006039
TCONS_00013404 lncRNA downstream 17716 28814353 ~ 28817882 (+) True XLOC_006039
TCONS_00013619 lncRNA downstream 118901 28915538 ~ 29004355 (+) False XLOC_006042
TCONS_00013620 lncRNA downstream 118901 28915538 ~ 29051176 (+) False XLOC_006042
TCONS_00013621 lncRNA downstream 118901 28915538 ~ 29097526 (+) False XLOC_006042
TCONS_00011915 mRNA upstream 11467 28761998 ~ 28774347 (+) True XLOC_006036
TCONS_00011913 mRNA upstream 12539 28747934 ~ 28773275 (+) False XLOC_006036
TCONS_00011912 mRNA upstream 12661 28747934 ~ 28773153 (+) False XLOC_006036
TCONS_00011907 mRNA upstream 37065 28705143 ~ 28748749 (+) False XLOC_006036
TCONS_00011914 mRNA upstream 37065 28747944 ~ 28748749 (+) False XLOC_006036
TCONS_00011919 mRNA downstream 23131 28819768 ~ 28902920 (+) False XLOC_006040
TCONS_00011918 mRNA downstream 23131 28819768 ~ 28902920 (+) False XLOC_006040
TCONS_00011917 mRNA downstream 23131 28819768 ~ 28902920 (+) False XLOC_006040
TCONS_00011920 mRNA downstream 25204 28821841 ~ 28902920 (+) False XLOC_006040
TCONS_00011921 mRNA downstream 57801 28854438 ~ 28891139 (+) False XLOC_006040
TCONS_00011911 other upstream 45445 28740235 ~ 28740369 (+) True XLOC_006037
TCONS_00011910 other upstream 47648 28735450 ~ 28738166 (+) False XLOC_006036
TCONS_00011893 other upstream 371255 28407378 ~ 28414559 (+) True XLOC_006025
TCONS_00011891 other upstream 375269 28407063 ~ 28410545 (+) False XLOC_006025
TCONS_00011890 other upstream 376230 28406913 ~ 28409584 (+) False XLOC_006025
TCONS_00011924 other downstream 128209 28924846 ~ 28924965 (+) True XLOC_006043
TCONS_00011935 other downstream 794357 29590994 ~ 29591115 (+) True XLOC_006053
TCONS_00011936 other downstream 958656 29755293 ~ 29755427 (+) True XLOC_006054
TCONS_00011948 other downstream 981700 29778337 ~ 29786021 (+) False XLOC_006055
TCONS_00011975 other downstream 1455104 30251741 ~ 30251857 (+) True XLOC_006063

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_10189922_10194006.mRNA True 1134 mRNA 0.47 10 CI01000012 10189876 ~ 10194006 (-)