RNA id: TCONS_00013621


Basic Information

Item Value
RNA id TCONS_00013621
length 2361
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id XLOC_006042
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28915538 ~ 29097526 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAACAGTAGGGACGCTGTTGGACCGCATGGACGTTCCAGCCCAGCCTGAACATCTGACCTGAGCAAGACAGGTGTGATAGTGTGAACAAGCTGCCCCAGAGGGGGATAAAGAATGACCCCAAACTGTGAAGCTCCAGGGCTGTTCCACTGGGTGCTTTGCTTTGCTCATGTCAGCCCTCATCAGACCTCATCAGCTTTATTTGGAGAACTCATTCGCACCTTCAGGAAGACCTTAACGATGAGCGTAAAGCTGCAGATCACAAGGTTGGAGAGATTTAGAGCACTCTTCACCGGATTCGAACACTGTTGtcacggtcaactctgctctgcgtctcaagtccaccaatgtaCATGTGGAGCTAtcggacaaactgataacagtggaaaagccatccatacggagGGAAAACTGTGCAAATCCACCGTCGCCGCACGGCTCCTGGGAATGTGGTGCAGGGGAGAAATCTTTCTGTTCGAGGCCCAGCTGAGAACATTATTGGATGGGTAAGATTATGGGGaagaaagcaaagaaaaaagaaggTCCAAGCAGGCTGGATTTAGCTCTATGGTGACTGTCAATGATACGGTGGGAGTCTGAACGCTGAATGCTCATCGGGAGGTCCAGGCTGGAGGTTCACCCATCCCAAGGGCACGGCTGCTTGCTTTTGGGATGCCATGGGATTACAGGCGGTCCAGTCTCAGCGGAGCCTCAGGTTGGCAGGATATTAATTAAGTAATTATCATGCCGTGAGGCGCAGTTATGAATTATGCATGAGGTCTTGATTGGGACATTTGTGATTGTGTAATCTAATTTCAGCCATATGTCTGACGCCTTTAGCTGGGTGTCTAACATCCAACACGCAGCCCccccaagcacaaacacacacaatgacattttcagctttttaattatatatttaaaactcTGACTTATTTAAATACACAAGTCATTTGCACAGTGGACACACTCTCGTCATTCCGAACATCATTAAAAGGCTGGaatgttttttttacccaaataaaGGTGGATGGGATGGGAACAGTTGATAGTTTGTTCTAGTATTGAATATTTAATCTGATTTTGTCTCAAAAACTGCTAATTAAACCACATTTATAAGATCCTATATTGATATAATTTTACTTTTGATATACACAGATGTAGTTAATGTTGTTGATCATTTCCTACCTAGGCCACATATTATGGTCTATGTAGATTAGATAGTATACAAACAATTGGGTCTCATAATTAATGTGATAGATGCAAAAGAAATGGGCAGGAATAAAGATCTGAGGTACTTTCAGTcttaaaaaataaagcttctttattagCATTGATAATTCCATGAAAAGCCATTAACTTTCATGGAACATTTTCAATCCATAAACGATTCTTCATAATGGAAATAGCATCATTAGATAATTAAAATGTTCTTAACACTACGAAAAATTGTTCTTTGAAGACATTGTATATTACTAGAAGATTTTTTAAAGATGGCATTCTATGGCATTGCTGCAAAAACACTGATttggaaaatgtgttttttaaagaagACGAGTGGGTCAGAGTATATCAGGAACAAAAAGCGATGGTTTGACAGCTAGGGTGACTGAGTATAAACCACTCAAGAGTCATTGTTGAATGGGCTAATAGAAGTTATACCATCTGGTCTGAGCCAGAGATCTACTGTGGCACAagtcacacagaattttaatGATGGTTATGGGAAGAATGTGTCACAATAAACAGAGTGCATTACACTCTGCTGCATATGGGACTGAGCACTACATCAATTCATTGTTAATCATTATTGCAGACGCTTCCCAACAATAGTACCGCCTGGCCTCCAAATGTAACAGATATTAATCCACATCtgtggcatatgttttaccaacAAAATTAATGTCACTACAATACAACCTAAAGTGCACTAAATCTAAGGGGCACTCAGCAGTGTACAGCATTTAACCTTTTGAGACCCTGAGCAAATGGCAATTTATGGGGAGGGAGCCTTCAGGGGTTCATGCCTCGACAATCAAGCTGTTTTGGCTGAATGCAGTGGATTAATGACATCCCACATAGAAAAATttatctggcccacacaatcagcttttgcttgtcCCAGATACTGCAGTGAAATAAGAATACATTAGtgcaccaagtctggcttccagacaaggacCAAACATGGACCAAATCATGGACCAAAGTTGATTAATAACATGGGCCTGAACTGTGACAGATGTGTTGATGTGTCacaactgcaatgaaattgataaacccttGAAGCATTGGGCTCTGGGTGCAATATGGGTATGTTTTTCTGAAAgagacctgattggtagaatgtTTTTTAccccaa

Function

GO:

id name namespace
GO:0140029 exocytic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013404 lncRNA upstream 97656 28814353 ~ 28817882 (+) True XLOC_006039
TCONS_00013618 lncRNA upstream 97973 28808092 ~ 28817565 (+) False XLOC_006039
TCONS_00013617 lncRNA upstream 340079 28572106 ~ 28575459 (+) True XLOC_006029
TCONS_00013616 lncRNA upstream 348052 28565179 ~ 28567486 (+) True XLOC_006030
TCONS_00013615 lncRNA upstream 348522 28565179 ~ 28567016 (+) False XLOC_006030
TCONS_00013625 lncRNA downstream 349291 29446817 ~ 29449721 (+) True XLOC_006049
TCONS_00013407 lncRNA downstream 791663 29889189 ~ 29891820 (+) True XLOC_006056
TCONS_00011972 lncRNA downstream 1130575 30228101 ~ 30233680 (+) False XLOC_006062
TCONS_00011974 lncRNA downstream 1130595 30228121 ~ 30230350 (+) True XLOC_006062
TCONS_00013626 lncRNA downstream 1579299 30676825 ~ 30677643 (+) True XLOC_006067
TCONS_00011923 mRNA upstream 1101 28903959 ~ 28914437 (+) True XLOC_006041
TCONS_00011917 mRNA upstream 12618 28819768 ~ 28902920 (+) False XLOC_006040
TCONS_00011926 mRNA downstream 30434 29127960 ~ 29227803 (+) False XLOC_006045
TCONS_00011925 mRNA downstream 30434 29127960 ~ 29227803 (+) False XLOC_006045
TCONS_00011927 mRNA downstream 96123 29193649 ~ 29224032 (+) True XLOC_006045
TCONS_00011928 mRNA downstream 141324 29238850 ~ 29288902 (+) True XLOC_006046
TCONS_00011929 mRNA downstream 194485 29292011 ~ 29349324 (+) True XLOC_006047
TCONS_00011911 other upstream 175169 28740235 ~ 28740369 (+) True XLOC_006037
TCONS_00011910 other upstream 177372 28735450 ~ 28738166 (+) False XLOC_006036
TCONS_00011893 other upstream 500979 28407378 ~ 28414559 (+) True XLOC_006025
TCONS_00011891 other upstream 504993 28407063 ~ 28410545 (+) False XLOC_006025
TCONS_00011890 other upstream 505954 28406913 ~ 28409584 (+) False XLOC_006025
TCONS_00011935 other downstream 493468 29590994 ~ 29591115 (+) True XLOC_006053
TCONS_00011936 other downstream 657767 29755293 ~ 29755427 (+) True XLOC_006054
TCONS_00011948 other downstream 680811 29778337 ~ 29786021 (+) False XLOC_006055
TCONS_00011975 other downstream 1154215 30251741 ~ 30251857 (+) True XLOC_006063
TCONS_00011978 other downstream 1414081 30511607 ~ 30511723 (+) True XLOC_006065

Expression Profile

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