RNA id: TCONS_00013404


Basic Information

Item Value
RNA id TCONS_00013404
length 516
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_006039
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28808092 ~ 28817882 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGCACAGAACTAGTGTTTGTTACTGACAGTATCTGCTTTCTTTACATCGTCCTTCAGTCTTTCAGAGGTGGCCTGTGCCATTAATGGTCTGATGTGAAAGGAGTCTCCTGCCAGCCCTGCTTGACACCATGGGCAATGAAAACAGCACTTCAGAGCTGCCGGAGGGCACTCCACAGAATGTGGTGCTATTTCCTCCAGAAGAGACACAGTCTGACATGGTAAAGGGTGCATGAGGATTTCAGCATGCTTGTGTGAAGTTGCACTTGGAGTGTGCATGGTAATTTTACTACAGAATCATGCAAACACATAGCAGTAAATTTGGATTATTGAGTTGAGATAAATACTTAAATCAGCCTAAATTGGATTGAGATGTTCTAGTGATCAAGATGAAGAAAGGGATGTTACAATGTGCCAGTCTTTCTATTGTGGTGACCCCCGATGGAATAAACTGAAGGAAAGTAAGTAACTGCCCAGTAATAAGTAAAGGCCTCTTTTTATTACTAGACCTCTCTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013617 lncRNA upstream 238894 28572106 ~ 28575459 (+) True XLOC_006029
TCONS_00013616 lncRNA upstream 246867 28565179 ~ 28567486 (+) True XLOC_006030
TCONS_00013615 lncRNA upstream 247337 28565179 ~ 28567016 (+) False XLOC_006030
TCONS_00013403 lncRNA upstream 330947 28475601 ~ 28483406 (+) True XLOC_006027
TCONS_00011892 lncRNA upstream 399794 28407070 ~ 28414559 (+) False XLOC_006025
TCONS_00013619 lncRNA downstream 97656 28915538 ~ 29004355 (+) False XLOC_006042
TCONS_00013620 lncRNA downstream 97656 28915538 ~ 29051176 (+) False XLOC_006042
TCONS_00013621 lncRNA downstream 97656 28915538 ~ 29097526 (+) False XLOC_006042
TCONS_00013622 lncRNA downstream 97657 28915539 ~ 29097526 (+) False XLOC_006042
TCONS_00013623 lncRNA downstream 97666 28915548 ~ 29097526 (+) False XLOC_006042
TCONS_00011916 mRNA upstream 17716 28785814 ~ 28796637 (+) True XLOC_006038
TCONS_00011915 mRNA upstream 40006 28761998 ~ 28774347 (+) True XLOC_006036
TCONS_00011913 mRNA upstream 41078 28747934 ~ 28773275 (+) False XLOC_006036
TCONS_00011912 mRNA upstream 41200 28747934 ~ 28773153 (+) False XLOC_006036
TCONS_00011919 mRNA downstream 1886 28819768 ~ 28902920 (+) False XLOC_006040
TCONS_00011918 mRNA downstream 1886 28819768 ~ 28902920 (+) False XLOC_006040
TCONS_00011917 mRNA downstream 1886 28819768 ~ 28902920 (+) False XLOC_006040
TCONS_00011920 mRNA downstream 3959 28821841 ~ 28902920 (+) False XLOC_006040
TCONS_00011921 mRNA downstream 36556 28854438 ~ 28891139 (+) False XLOC_006040
TCONS_00011911 other upstream 73984 28740235 ~ 28740369 (+) True XLOC_006037
TCONS_00011910 other upstream 76187 28735450 ~ 28738166 (+) False XLOC_006036
TCONS_00011893 other upstream 399794 28407378 ~ 28414559 (+) True XLOC_006025
TCONS_00011891 other upstream 403808 28407063 ~ 28410545 (+) False XLOC_006025
TCONS_00011890 other upstream 404769 28406913 ~ 28409584 (+) False XLOC_006025
TCONS_00011924 other downstream 106964 28924846 ~ 28924965 (+) True XLOC_006043
TCONS_00011935 other downstream 773112 29590994 ~ 29591115 (+) True XLOC_006053
TCONS_00011936 other downstream 937411 29755293 ~ 29755427 (+) True XLOC_006054
TCONS_00011948 other downstream 960455 29778337 ~ 29786021 (+) False XLOC_006055
TCONS_00011975 other downstream 1433859 30251741 ~ 30251857 (+) True XLOC_006063

Expression Profile

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