RNA id: TU681


Basic Information

Item Value
RNA id TU681
length 250
lncRNA type read_through
GC content 0.53
exon number 2
gene id G579
representative False

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1767917 ~ 1908808 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCTTTTTTTTTTTGTCAGTTTTTACAGTCTTTTATTGTTAGCAAAAGATTCATTTCACTCCTGCATTTTCTCGATGGTTTCCTCCTTGTATTTGCCCTTCTCCTTTATGTCCTGTCGGGACTTGGCCTTGCGCTCAAGAATCTTCTTGCGATCCTTATCAAGCTTTAGCCTGGTGATCACCACCTGAAGAACAGAAAGATTGATTCATTTTGCGAACATTTCCATCAACATAAAACACCATGACATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702 lncRNA upstream 99600 1733247 ~ 1734389 (+) True G593
TU674 lncRNA upstream 127004 1706770 ~ 1706985 (+) True G576
TU524 lncRNA upstream 343642 1487224 ~ 1490347 (+) True G428
TU547 lncRNA upstream 365187 1458212 ~ 1458485 (+) True G451
TU618 lncRNA upstream 429855 1403153 ~ 1404134 (+) True G520
TU809 lncRNA downstream 13988 1918732 ~ 1918942 (+) True G699
TU810 lncRNA downstream 14512 1919256 ~ 1919564 (+) True G700
TU822 lncRNA downstream 119017 2023761 ~ 2023971 (+) True G710
TU829 lncRNA downstream 133289 2038033 ~ 2038258 (+) True G717
TU830 lncRNA downstream 133733 2038477 ~ 2038716 (+) True G718
CI01000000_01680507_01690297.mRNA mRNA upstream 142795 1680507 ~ 1691194 (+) True CI01000000_01680507_01690297
CI01000000_01511690_01517631.mRNA mRNA upstream 316270 1511690 ~ 1517719 (+) True CI01000000_01511690_01517631
CI01000000_01459294_01485147.mRNA mRNA upstream 348678 1459294 ~ 1485311 (+) False CI01000000_01459294_01485147
CI01000000_01405606_01410241.mRNA mRNA upstream 423486 1405606 ~ 1410503 (+) True CI01000000_01405606_01410241
CI01000000_01347674_01352321.mRNA mRNA upstream 480761 1347674 ~ 1353228 (+) True CI01000000_01347674_01352321
CI01000000_01916310_01925119.mRNA mRNA downstream 11308 1916052 ~ 1925390 (+) True CI01000000_01916310_01925119
CI01000000_01978179_01992602.mRNA mRNA downstream 73435 1978179 ~ 1992961 (+) True CI01000000_01978179_01992602
CI01000000_01996254_01997531.mRNA mRNA downstream 91330 1996074 ~ 1997617 (+) True CI01000000_01996254_01997531
CI01000000_02018856_02033091.mRNA mRNA downstream 113853 2018597 ~ 2034379 (+) True CI01000000_02018856_02033091
CI01000000_02080057_02086228.mRNA mRNA downstream 175087 2079831 ~ 2087510 (+) True CI01000000_02080057_02086228
TU531 other upstream 401135 1425121 ~ 1432854 (+) True G435
TU431 other upstream 1157052 671842 ~ 676937 (+) True G350
TU325 other upstream 1326917 503209 ~ 507072 (+) True G252
TU3086 other downstream 2549034 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 2821242 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8300087 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 8522479 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 9073745 10978489 ~ 10980872 (+) True G7018

Expression Profile