RNA id: TU39220


Basic Information

Item Value
RNA id TU39220
length 848
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G34550
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14910081 ~ 14912736 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAGATAACGGTGTGCCGTTGCTCTTTGGAAAAGGGCCAGCTGGACATGTACCCTTTGGAGATCTGCAGCGGTGGCCATTAGCGCTCTCTCCAGCTTCCCGCCATCTGCATTGCTTGCTTCTTGTTCCTTTGGATAAGCAGAGAATGACTTCATGGCCACTTGCCCCAGACTTGCTCCTAGCAGTGAGTTGCTCTCCAGTTTGGTGAGACGGGAGGCCTGGTTCCTGCTGAACTGAATGAGCTGCTGCAACGTCTCATTGTTTTGGGCTTGATACGTATCTGCAGCCTCTCTGAGCTGGACGCACGCTTTGTTGTTGTTAAGCTTATGGAGCTCCTTCCGTATGGTGTCCATCTCCGCCTTAACCATGTCCTCACACTGCTGCAAGAACATGTCTTGCTTCATCTGAGAGTCCTCCAGCATGATGAACAGTTTGTCCCAGCGTGAGAAGTCTTGCGGCGGACAGGGAATCTGCGTAGCTCCTGTTTTCAGGCGGTCACCATTGGAGATTTCATTATAGTAGGAATCAGAGTAATCCTCTCCATATTCATAACCAAACACGTTCCCACTCAAAAAGCAGGGCAGGCAGAGGGCCAACACGGCCCCGGGCACATACATTCTGATGTTTAATGCTGGTGTATGTTAGTCTGTCTCTGCATGTAATCAGATTATTTTGAAGTAAATCAGATGTTCCACAGCCACTAAGATCCCTTGTGGGTTTTTTCCCCCCTTTTCCTTTGTTGTTACTCAGCCACTGTGCCTCATGTGCCTGGAAGCCCACTGAGCGTACATGAGGCTGAGCAAGCTCTTTTAAACTCAGCACTCAGAGCAGGGCTGTCACACTGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39113 lncRNA downstream 16786 14889692 ~ 14893295 (-) True G34470
TU39111 lncRNA downstream 22025 14885825 ~ 14888056 (-) True G34468
TU39117 lncRNA downstream 71759 14837689 ~ 14838322 (-) True G34474
TU39193 lncRNA downstream 91925 14817726 ~ 14818156 (-) True CI01000004_14815294_14818132
TU39121 lncRNA downstream 103575 14806001 ~ 14806506 (-) True G34478
TU39228 lncRNA upstream 8332 14921068 ~ 14921339 (-) True G34558
TU39320 lncRNA upstream 67606 14980342 ~ 14995039 (-) True G34635
TU39346 lncRNA upstream 117709 15030445 ~ 15030741 (-) True G34661
TU39348 lncRNA upstream 119255 15031991 ~ 15032373 (-) True G34663
TU39349 lncRNA upstream 125856 15038592 ~ 15038910 (-) True G34664
CI01000004_14897662_14906408.mRNA mRNA downstream 3655 14897250 ~ 14906426 (-) True CI01000004_14897662_14906408
CI01000004_14860344_14863053.mRNA mRNA downstream 46633 14860286 ~ 14863448 (-) True CI01000004_14860344_14863053
CI01000004_14846825_14850092.mRNA mRNA downstream 58550 14846785 ~ 14851531 (-) True CI01000004_14846825_14850092
CI01000004_14843132_14843640.mRNA mRNA downstream 66102 14842913 ~ 14843979 (-) True CI01000004_14843132_14843640
CI01000004_14832429_14839825.mRNA mRNA downstream 70062 14832151 ~ 14840019 (-) True CI01000004_14832429_14839825
CI01000004_14951433_14957539.mRNA mRNA upstream 38440 14951176 ~ 14957841 (-) True CI01000004_14951433_14957539
CI01000004_14999971_15002640.mRNA mRNA upstream 86539 14999275 ~ 15002640 (-) True CI01000004_14999971_15002640
CI01000004_15063428_15066310.mRNA mRNA upstream 150692 15063428 ~ 15066310 (-) True CI01000004_15063428_15066310
CI01000004_15068206_15086386.mRNA mRNA upstream 155019 15067755 ~ 15086519 (-) True CI01000004_15068206_15086386
CI01000004_15086759_15087492.mRNA mRNA upstream 173949 15086685 ~ 15087533 (-) False CI01000004_15086759_15087492
TU39197 other downstream 81958 14827630 ~ 14828123 (-) True CI01000004_14827536_14831360
TU39186 other downstream 101552 14808052 ~ 14808529 (-) True CI01000004_14808034_14808645
TU39120 other downstream 127425 14782131 ~ 14782656 (-) True CI01000004_14775109_14792782
TU39156 other downstream 153427 14755938 ~ 14756654 (-) False CI01000004_14756092_14758171
TU39154 other downstream 158362 14751171 ~ 14751719 (-) True CI01000004_14749034_14751685
TU39317 other upstream 98625 15011361 ~ 15025221 (-) True G34632
TU39354 other upstream 138440 15051176 ~ 15052775 (-) False G34668
TU39355 other upstream 138440 15051176 ~ 15051869 (-) True G34668
TU39323 other upstream 173935 15087179 ~ 15090358 (-) True G34638
TU39411 other upstream 368280 15281016 ~ 15281649 (-) True G34718

Expression Profile