RNA id: CI01000004_14843132_14843640.mRNA


Basic Information

Item Value
RNA id CI01000004_14843132_14843640.mRNA
length 975
RNA type mRNA
GC content 0.36
exon number 2
gene id CI01000004_14843132_14843640
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14842913 ~ 14843979 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTACAATGTGAATTTGTGTGGCAGTATGAATGATAAATTACATTAAATTCCTACAATACGCTCCTTTAGTTCACCAGTCCCTTTAGAATAGCCAGTAGTTTAGGAAACAATTATCTTTATTTACATTAAACTCTATGAGATGGCACTGTTTCAGTTATGCAATACTTTCAGTTAACCATTAGAGGGCAGTAGTTACTCAATATTACCTTTGACAATACTGCAGCTGTTATGGTTATCCACAAGCTCCTCCTTGGATCATCATTATTATACTAAAAGTAAGACTCTCATATTCATTGATTTATCTAGACCTGAATGTTTATTCAGCACAGACACAGTCATGTCACACAGGTTGAGGAACATATTTCTCTTCGCACTATTCATTCTTGAGTGCAGATCAGAGGACACAGTTGATCAACCAGACAAACATGTGACTGAAGCTGAAGGAAGATCAGTGACATTACAGTGTAAATATAAAACAGATTCAGATCAAGAAAATTTATTCTGGTACATCCAGAGAGCAAATGACTTTCCTAAATACATCCTGAGGAGAAGCAAATATGGAGGAGAAAATGGCACTGAGTTCCAGGAGAGATTTCACTCTGAACTTTCATCAAATTCAGTTCCTCTGATGATCAAGGATCTGCGTGTGTCTGACTCTGCTGTGTACTACTGTGCTCTGAGGCCCACAGTCACAGGAAACACATCAGATCTATACAAAAACCTGTTACACAGAGACACAGATGAACACAGATAGAAAGAAACTGTAACTGACAATTACAGTATCATGTCAGAAAGTAATAGAATCAATGAATAGGCTAAATCACAGGTACCAAATCAAAAGGTAGACACAGATTTCATTTAATTTAATTTTAAGGTGTGAATTTGTGTGGCAAGGTGAAAGATTTACATTACATTCAATTAGAGTTATTAAATCCCTATAAACTGCCCTTTAATACAAGCAACAAACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39117 lncRNA downstream 4591 14837689 ~ 14838322 (-) True G34474
TU39193 lncRNA downstream 24757 14817726 ~ 14818156 (-) True CI01000004_14815294_14818132
TU39121 lncRNA downstream 36407 14806001 ~ 14806506 (-) True G34478
TU39166 lncRNA downstream 68272 14774282 ~ 14774641 (-) False CI01000004_14775109_14792782
TU39165 lncRNA downstream 71312 14771247 ~ 14771381 (-) True G34507
TU39111 lncRNA upstream 41846 14885825 ~ 14888056 (-) True G34468
TU39113 lncRNA upstream 45713 14889692 ~ 14893295 (-) True G34470
TU39220 lncRNA upstream 66102 14910081 ~ 14912736 (-) True G34550
TU39228 lncRNA upstream 77089 14921068 ~ 14921339 (-) True G34558
TU39320 lncRNA upstream 136363 14980342 ~ 14995039 (-) True G34635
CI01000004_14832429_14839825.mRNA mRNA downstream 2894 14832151 ~ 14840019 (-) True CI01000004_14832429_14839825
CI01000004_14827536_14831360.mRNA mRNA downstream 11387 14827496 ~ 14831526 (-) False CI01000004_14827536_14831360
CI01000004_14815294_14818132.mRNA mRNA downstream 21397 14815142 ~ 14821516 (-) False CI01000004_14815294_14818132
CI01000004_14809409_14811408.mRNA mRNA downstream 31204 14809223 ~ 14811709 (-) True CI01000004_14809409_14811408
CI01000004_14808034_14808645.mRNA mRNA downstream 33944 14807938 ~ 14808969 (-) False CI01000004_14808034_14808645
CI01000004_14846825_14850092.mRNA mRNA upstream 2806 14846785 ~ 14851531 (-) True CI01000004_14846825_14850092
CI01000004_14860344_14863053.mRNA mRNA upstream 16307 14860286 ~ 14863448 (-) True CI01000004_14860344_14863053
CI01000004_14897662_14906408.mRNA mRNA upstream 53271 14897250 ~ 14906426 (-) True CI01000004_14897662_14906408
CI01000004_14951433_14957539.mRNA mRNA upstream 107197 14951176 ~ 14957841 (-) True CI01000004_14951433_14957539
CI01000004_14999971_15002640.mRNA mRNA upstream 155296 14999275 ~ 15002640 (-) True CI01000004_14999971_15002640
TU39197 other downstream 14790 14827630 ~ 14828123 (-) True CI01000004_14827536_14831360
TU39186 other downstream 34384 14808052 ~ 14808529 (-) True CI01000004_14808034_14808645
TU39120 other downstream 60257 14782131 ~ 14782656 (-) True CI01000004_14775109_14792782
TU39156 other downstream 86259 14755938 ~ 14756654 (-) False CI01000004_14756092_14758171
TU39154 other downstream 91194 14751171 ~ 14751719 (-) True CI01000004_14749034_14751685
TU39317 other upstream 167382 15011361 ~ 15025221 (-) True G34632
TU39354 other upstream 207197 15051176 ~ 15052775 (-) False G34668
TU39355 other upstream 207197 15051176 ~ 15051869 (-) True G34668
TU39323 other upstream 242692 15087179 ~ 15090358 (-) True G34638
TU39411 other upstream 437037 15281016 ~ 15281649 (-) True G34718

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) unassigned_transcript_484 True 400 V_gene_segment 0.46 2 NC_053122.1 1560679 ~ 1561168 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_484 True 82 tRNA 0.60 1 NC_056702.1 25999503 ~ 25999584 (-)