RNA id: CI01000005_07163500_07164501.mRNA


Basic Information

Item Value
RNA id CI01000005_07163500_07164501.mRNA
length 1267
RNA type mRNA
GC content 0.36
exon number 1
gene id CI01000005_07163500_07164501
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7163432 ~ 7164698 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAACTGAGTCATATTAGGGGCAAGCATTCTCACACAGAGTCTGCTCTCCAGGATAGATCTATCATGGAAATGTCTAACTGGGGAGTGACAAACGCAGATTATCAAACCATCCAATACTGCTTTATAAACAAAAATTTGTCTTGTACCAGAAGTATCCGACCTGAAGTGGAGTACATTATTGTGTACATTTTCGTTGCTCTAACATCAGTGTTCACTGTGTTTCTGAACCTTTTGGTGATCATCTCCATCTCACACTTCAAGCAGCTCCACACTCCCACCAATGTGCTGATCCTCTCTCTGGCAGTGGCTGATCTGATCGTAGGACTGATTCTCATGCCAGTGCAGGGAATGAAACTGATTGAGCCATGCTGGTACTTTGGAGAAATATTTTGCTCTATATTTCCTTTTATTGCTTTTGTGGTTGTCGTGGCATCTCTTGGTACTTTGATTATTATATCTGTGGATCGATTCATTGCTGTGAATGACCCTTTGCGATATCCAATGAAGGTCAATAATAACAGAGCTGTTGTTTCTATTGTTGTAAACTGGTTATTCTCCTTCATGTATAATTTTTATCTGTTGTATGAGTTTTTACTGTATCCAGAGAGGAACCACACATGTATTGGAGAATGCATACTTTCTGTGAAGTTGGAAAATATAATACTAGATGCTTTTGTTTGTTTAGTGGTACCTTGCTGTATAATTATTCCTTTATATGTGAAAATCTGCTTTGTAGCAAACTATCAAGCGAAGCATGTAAATTCAGTCACAGACAAAAAGGCCAAATCAGAAAAAAAGGCTGCAAGAACCTTAGGGATTGTAGTACTGGTTTATCTTCTTTTCTGGACGCCATACTATTTATATTCTCTTTCTGGTGGGCATGATGAAAATGACTCTCTTATAATTAAAGTAATGGATTGGATTGTGTGCATGAATTCCTGTATGAATCCACTTATATATGCAATGTTTTATCGATGGTTCAGACTGTCAGCAAAATACATTTTGACAATGAAAATATTTGAACCTTCATCTGCATACTTAAATCTGTTCCCAGAAGAGAAATGATCACTTACACTCTCATGCAAATGTAAATGAGATAATGTGTCTCTAAATGAAAGAGTATATTGTGATCATATTTGTGAGTGACACTATCTGCTCCATTTTTCATTGAAAATGAAAGATGCTTGGAAGATAGATGTTAAAAGAAAATTTAACATTTATCAAACTAAAGTAGTTATTACAAAGATGAACTTTAGTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45342 lncRNA upstream 17536 7144875 ~ 7145896 (+) True G40005
TU45260 lncRNA upstream 136042 7025017 ~ 7027390 (+) True G39943
TU45219 lncRNA upstream 224678 6938523 ~ 6938754 (+) True G39906
TU45174 lncRNA upstream 402349 6760778 ~ 6761083 (+) True G39865
TU45173 lncRNA upstream 409390 6753809 ~ 6754042 (+) True G39864
TU45375 lncRNA downstream 69099 7233797 ~ 7234020 (+) True G40035
TU45379 lncRNA downstream 74350 7239048 ~ 7239267 (+) True G40039
TU45388 lncRNA downstream 83715 7248413 ~ 7248745 (+) True G40048
TU45294 lncRNA downstream 119145 7283843 ~ 7284924 (+) False G39962
TU45293 lncRNA downstream 119863 7284561 ~ 7284924 (+) True G39962
CI01000005_07159231_07159796.mRNA mRNA upstream 3627 7158678 ~ 7159805 (+) True CI01000005_07159231_07159796
CI01000005_07130117_07133993.mRNA mRNA upstream 29393 7128835 ~ 7134039 (+) True CI01000005_07130117_07133993
CI01000005_06988616_06989546.mRNA mRNA upstream 173886 6988616 ~ 6989546 (+) True CI01000005_06988616_06989546
CI01000005_06965750_06987383.mRNA mRNA upstream 175813 6965750 ~ 6987619 (+) True CI01000005_06965750_06987383
CI01000005_06963000_06963933.mRNA mRNA upstream 198768 6962450 ~ 6964664 (+) True CI01000005_06963000_06963933
CI01000005_07176040_07176850.mRNA mRNA downstream 10955 7175653 ~ 7176970 (+) True CI01000005_07176040_07176850
CI01000005_07179247_07180248.mRNA mRNA downstream 14496 7179194 ~ 7180566 (+) True CI01000005_07179247_07180248
CI01000005_07259213_07282404.mRNA mRNA downstream 94515 7259213 ~ 7283295 (+) True CI01000005_07259213_07282404
CI01000005_07297797_07302584.mRNA mRNA downstream 133099 7297797 ~ 7302676 (+) True CI01000005_07297797_07302584
CI01000005_07309292_07309954.mRNA mRNA downstream 144594 7309292 ~ 7309954 (+) True CI01000005_07309292_07309954
TU45244 other upstream 165092 6997544 ~ 6998340 (+) True G39930
TU43730 other upstream 2426575 4735346 ~ 4736857 (+) True CI01000005_04735429_04736817
TU42433 other upstream 3439929 3722744 ~ 3723503 (+) True G37392
TU41224 other upstream 5502400 1659733 ~ 1661032 (+) True G36291
TU41148 other upstream 5625628 1503143 ~ 1537804 (+) True G36223
TU45443 other downstream 433291 7597989 ~ 7598810 (+) True G40098

Expression Profile