RNA id: TU41613


Basic Information

Item Value
RNA id TU41613
length 214
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G36640
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1778873 ~ 1779086 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGTCGTCTGAGACAGCAGAGAGTACATTAGCCAGTGGGCGATGAGGTTTCTACTACCACTACATCTTTGTATACGCTTCAATGTAGTGACGATGCAAACTGCCTCTAAAAACACCAACGAACATAGTGACGATACGCGATCTGTAGAGCAGTTTGTCCATTTAGGGTTACTGTAGAAACATGCTGGTGCAAAATGGCGACTTGACATGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41604 lncRNA downstream 10526 1767923 ~ 1768347 (-) True G36631
TU41499 lncRNA downstream 58277 1705218 ~ 1720596 (-) True G36535
TU41603 lncRNA downstream 113727 1664878 ~ 1665146 (-) True G36630
TU41595 lncRNA downstream 116701 1661968 ~ 1662172 (-) True G36626
TU41589 lncRNA downstream 138358 1640210 ~ 1640515 (-) True G36620
TU41489 lncRNA upstream 99475 1878561 ~ 1879486 (-) True G36525
TU41487 lncRNA upstream 134759 1913845 ~ 1917676 (-) True G36523
TU41478 lncRNA upstream 143329 1922415 ~ 2001557 (-) True G36517
TU41496 lncRNA upstream 145615 1924701 ~ 1925368 (-) True CI01000005_01924855_01938284
TU41664 lncRNA upstream 237183 2016269 ~ 2016491 (-) True G36690
CI01000005_01761513_01769840.mRNA mRNA downstream 9022 1761187 ~ 1769851 (-) True CI01000005_01761513_01769840
CI01000005_01723641_01729676.mRNA mRNA downstream 48537 1723338 ~ 1730336 (-) True CI01000005_01723641_01729676
CI01000005_01677318_01687512.mRNA mRNA downstream 91274 1677161 ~ 1687599 (-) True CI01000005_01677318_01687512
CI01000005_01674196_01674495.mRNA mRNA downstream 104378 1673439 ~ 1674495 (-) True CI01000005_01674196_01674495
CI01000005_01648294_01654249.mRNA mRNA downstream 124624 1647991 ~ 1654249 (-) True CI01000005_01648294_01654249
CI01000005_01883894_01899867.mRNA mRNA upstream 104136 1883222 ~ 1899867 (-) False CI01000005_01883894_01899867
CI01000005_01924855_01938284.mRNA mRNA upstream 145592 1924678 ~ 1938284 (-) False CI01000005_01924855_01938284
CI01000005_01944678_01957016.mRNA mRNA upstream 164875 1943961 ~ 1957016 (-) True CI01000005_01944678_01957016
CI01000005_02163205_02167196.mRNA mRNA upstream 383342 2162428 ~ 2167196 (-) True CI01000005_02163205_02167196
CI01000005_02240553_02245892.mRNA mRNA upstream 460751 2239837 ~ 2246835 (-) True CI01000005_02240553_02245892
TU41598 other downstream 114594 1663267 ~ 1664279 (-) False G36628
TU41601 other downstream 114594 1663267 ~ 1664279 (-) True G36628
TU40958 other downstream 735201 1021295 ~ 1043672 (-) True G36049
TU41481 other upstream 104168 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other upstream 104168 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU43637 other upstream 2425759 4204845 ~ 4206208 (-) True G38510
TU43542 other upstream 2602152 4381238 ~ 4401110 (-) True G38415
TU44762 other upstream 4054706 5833792 ~ 5834392 (-) False G39515

Expression Profile