RNA id: CI01000006_03853517_03857679.mRNA


Basic Information

Item Value
RNA id CI01000006_03853517_03857679.mRNA
length 1432
RNA type mRNA
GC content 0.50
exon number 12
gene id CI01000006_03853517_03857679
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3853517 ~ 3857679 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCTAATGGCCAGGAAACGGCATCTCTGAACGGTGAACCCGTGCTCAAGCGCTCCAGAGACAGCGTGGACTCACTGCGGATCCTGCGGGAGCCCCAGAATAAAGTGACCGTAGTGTTAGGAGCTCAGTGGGGAGATGAGGGGAAAGGGAAAGTGGTCGACCTCCTGGCAATGGACGCCGACATTGTATGCAGATGCCAGGGTGGAAATAACGCGGGACACACAGTGGTGGTGGACTCAGTAGAGTATGACTTTCACCTGCTTCCTAGTGGCGTTCTCAACAAAAAGGCCACCTCATTTATTGGAAATGGTGTTGTGATACACCTGCCAGGACTTTTTGAGGAGGCTGAGAAGAACTCTCAGAAAGGCAATGCGCTGTTAGATGAAGTATTTATGGTTTATTTTTTTCCCCCGACTTTGTTTAATTTAGGACTTCAAGGATGGGAGGAGCGACTGAAGATATCTGACCGGGCACATATTGTGTTCAACTTCCATCAGGCCGTTGATGGGATACAGGAGCAGCTGAGACAGCAGCAGGCAGGGAAGAATTTGGGCACCACTAAGAAGGGCATTGGACCTGCATATTCCTCCAAAGCAGCACGTAATGGACTGAGAGTGTGCGATCTGGTCTCAGACTTCTCAGTATTTGAGGAAAAGTTTCGGGTACTGGCTGGTCATTTTCAGACCACATATCCTAACCTTAATATTGATATTGATGCTGAGCTGGAGCAACTGAAGGGTTATGCTGAGAGGTTACGGCCTCTAGTAACTGATGGGGTTTATTTCATGCACAAAGCCCTTACTGGACCAAGCAAGAAGATTCTGGTGGAAGGAGCTAATGCTGCCTTACTGGATATTGATTTCGGTATGAATGGCAATCCCACATACACAGGAAGATCCACTGGGACCTACCCCTTTGTGACCTCGTCAAACTGTACTGTCGGAGGCGTTTGCACAGGCCTTGGAGTCCCTCCATCTCATGTTGGCCGTGTGTATGGAGTGGTGAAGGCCTACACCACCAGGGTGGGAGTGGGAGCATTCCCTACTGAGCAAGATAATGACACTGGCAATCTGCTGCAGAGCAGAGGGAGGGAAGTTGGCGTCACAACAGGCAGGCGGCGTCGCTGTGGATGGCTGGACTTGGTTTTGGTTCGCTATGCCCACATGGTTAATGGTTTTTCAGCCATTGCTCTGACCAAGTTGGACATTCTTGACACATTGCCAGAAATAAAGATCGGCATAGCCTACACAGTTGATGGAAAGCCTCTTCCCAGTTTTCCTGCAAACATGGACGTCCTCACAAAGGTTCAAGTGACTTACGAGACGTTCCCTGGCTGGTGTTGTAACACTGAGGGAGTGCGCAGTTTTGATGAGCTACCCTCACAGGCACAAGCTTACATTCGATTTATCGAAACTTTCCTGCAGGTGCCAG

Function

GO:

id name namespace
GO:0004019 adenylosuccinate synthase activity molecular_function

KEGG:

id description
K01939 purA, ADSS; adenylosuccinate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49225 lncRNA downstream 46668 3806636 ~ 3806849 (-) True G43368
TU49217 lncRNA downstream 77065 3776221 ~ 3776452 (-) True G43360
TU49037 lncRNA downstream 111085 3742266 ~ 3742432 (-) True G43191
TU49214 lncRNA downstream 113770 3739097 ~ 3739747 (-) True G43357
TU49195 lncRNA downstream 316301 3536955 ~ 3537216 (-) True G43339
TU49235 lncRNA upstream 3802 3861481 ~ 3861708 (-) True G43378
TU49234 lncRNA upstream 4366 3862045 ~ 3862514 (-) True G43377
TU49236 lncRNA upstream 5434 3863113 ~ 3863338 (-) True G43379
TU49237 lncRNA upstream 5862 3863541 ~ 3863768 (-) True G43380
TU49240 lncRNA upstream 8266 3865945 ~ 3866197 (-) True G43383
CI01000006_03850934_03852259.mRNA mRNA downstream 1213 3850934 ~ 3852304 (-) True CI01000006_03850934_03852259
CI01000006_03841667_03847765.mRNA mRNA downstream 5752 3841321 ~ 3847765 (-) True CI01000006_03841667_03847765
CI01000006_03814498_03821222.mRNA mRNA downstream 32295 3814433 ~ 3821222 (-) True CI01000006_03814498_03821222
CI01000006_03782744_03792823.mRNA mRNA downstream 60233 3782699 ~ 3793284 (-) True CI01000006_03782744_03792823
CI01000006_03771304_03775923.mRNA mRNA downstream 77385 3771024 ~ 3776132 (-) True CI01000006_03771304_03775923
CI01000006_04131548_04142994.mRNA mRNA upstream 273681 4131360 ~ 4142994 (-) True CI01000006_04131548_04142994
CI01000006_04144468_04144836.mRNA mRNA upstream 286789 4144468 ~ 4145103 (-) True CI01000006_04144468_04144836
CI01000006_04154152_04182430.mRNA mRNA upstream 296416 4154095 ~ 4182430 (-) False CI01000006_04154152_04182430
CI01000006_04232222_04238240.mRNA mRNA upstream 374229 4231908 ~ 4238240 (-) True CI01000006_04232222_04238240
CI01000006_04244321_04245262.mRNA mRNA upstream 386215 4243894 ~ 4247214 (-) True CI01000006_04244321_04245262
TU48938 other downstream 919533 2908451 ~ 2933984 (-) True G43102
TU48776 other downstream 1227331 2569774 ~ 2570203 (-) False G42952
TU48777 other downstream 1227331 2569774 ~ 2570195 (-) False G42952
TU48778 other downstream 1227331 2569774 ~ 2570192 (-) True G42952
TU48753 other downstream 1271311 2568913 ~ 2582206 (-) True G42934
TU49430 other upstream 494831 4352510 ~ 4355428 (-) True G43549
TU49494 other upstream 701830 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU51020 other upstream 3115545 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other upstream 3115771 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51019 other upstream 3116337 6974016 ~ 6976872 (-) True CI01000006_06974359_06976736

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037665 False 2304 mRNA 0.47 13 NC_007132.7 26522571 ~ 26531535 (+)
mexican tetra (Astyanax mexicanus) TU163651 True 2441 lncRNA 0.45 13 NC_035910.1 11615161 ~ 11620970 (-)