RNA id: TU49234


Basic Information

Item Value
RNA id TU49234
length 470
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G43377
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3862045 ~ 3862514 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAATGAAAATTCTTTTAGAACACAAGGCAGAGAATGCTGCTCAACTGAGATCTGTGTTAAATGTTGAATGGCATCTCCTCTACTATATACACATCAGCATCTGGTTTTAATTTAACAGCATGACAGCTGATAACTGCACTTTAATTGAATGAAAGAGAAATAAGGGGCAAACATGAAAAAATAAATCATTCGAATGAGCCACTGATCTACACTCCAATTTGAAAACTATTACCACAAAAAGGCAAATAAATGAAATATGACAGTCATTAACTTAGCATCTATGCTGATGAATGTATGCTTTCATGAGTCTTTTGCATGAAAGCAACATGCTACATTTACTGTCTTTGATGCTCTCAGGAAGGGATCTCTTGCCCCATCATGTTTTTAAATATTTTAAGGTACATTTCCACTCAGGCACCATGAAGATGTGTCATGTGCAGGCAGAGCGAGGTGTAAGCAGTAGACTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49235 lncRNA downstream 337 3861481 ~ 3861708 (-) True G43378
TU49225 lncRNA downstream 55196 3806636 ~ 3806849 (-) True G43368
TU49217 lncRNA downstream 85593 3776221 ~ 3776452 (-) True G43360
TU49037 lncRNA downstream 119613 3742266 ~ 3742432 (-) True G43191
TU49214 lncRNA downstream 122298 3739097 ~ 3739747 (-) True G43357
TU49236 lncRNA upstream 599 3863113 ~ 3863338 (-) True G43379
TU49237 lncRNA upstream 1027 3863541 ~ 3863768 (-) True G43380
TU49240 lncRNA upstream 3431 3865945 ~ 3866197 (-) True G43383
TU49257 lncRNA upstream 16514 3879028 ~ 3879651 (-) True G43393
TU49066 lncRNA upstream 25392 3887906 ~ 3888705 (-) True G43220
CI01000006_03853517_03857679.mRNA mRNA downstream 4366 3853517 ~ 3857679 (-) True CI01000006_03853517_03857679
CI01000006_03850934_03852259.mRNA mRNA downstream 9741 3850934 ~ 3852304 (-) True CI01000006_03850934_03852259
CI01000006_03841667_03847765.mRNA mRNA downstream 14280 3841321 ~ 3847765 (-) True CI01000006_03841667_03847765
CI01000006_03814498_03821222.mRNA mRNA downstream 40823 3814433 ~ 3821222 (-) True CI01000006_03814498_03821222
CI01000006_03782744_03792823.mRNA mRNA downstream 68761 3782699 ~ 3793284 (-) True CI01000006_03782744_03792823
CI01000006_04131548_04142994.mRNA mRNA upstream 268846 4131360 ~ 4142994 (-) True CI01000006_04131548_04142994
CI01000006_04144468_04144836.mRNA mRNA upstream 281954 4144468 ~ 4145103 (-) True CI01000006_04144468_04144836
CI01000006_04154152_04182430.mRNA mRNA upstream 291581 4154095 ~ 4182430 (-) False CI01000006_04154152_04182430
CI01000006_04232222_04238240.mRNA mRNA upstream 369394 4231908 ~ 4238240 (-) True CI01000006_04232222_04238240
CI01000006_04244321_04245262.mRNA mRNA upstream 381380 4243894 ~ 4247214 (-) True CI01000006_04244321_04245262
TU48938 other downstream 928061 2908451 ~ 2933984 (-) True G43102
TU48776 other downstream 1235859 2569774 ~ 2570203 (-) False G42952
TU48777 other downstream 1235859 2569774 ~ 2570195 (-) False G42952
TU48778 other downstream 1235859 2569774 ~ 2570192 (-) True G42952
TU48753 other downstream 1279839 2568913 ~ 2582206 (-) True G42934
TU49430 other upstream 489996 4352510 ~ 4355428 (-) True G43549
TU49494 other upstream 696995 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU51020 other upstream 3110710 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other upstream 3110936 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51019 other upstream 3111502 6974016 ~ 6976872 (-) True CI01000006_06974359_06976736

Expression Profile