RNA id: CI01000006_07078406_07080719.mRNA



Basic Information


Item Value
RNA id CI01000006_07078406_07080719.mRNA
length 2211
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000006_07078406_07080719
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7076952 ~ 7080930 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATATATAGGATTAATATGTTATTTCAACTCAAAAATGTCTTAAAGCATCCAAAACGAACCTAATTACCAGATTTTCAAATATGTGATACCATTTGTATAGTTGTTTTTACCATATATAGTATGACATATAAACAAATCATAGACTGTCACTGTAATCAAAGTCCTCCCCCTTCCCGAAGGAAATCAGTGGATCATTTTGATTAGAGGAAGGGAAATCAAGCAGATGAAGGATAATGTACAGCCTAGTGTCATGACAAGCATAAATAAATATGACTGATCCATCTGAGGTCACATGACCCAGCCATCATTCTCAGAGGCAAACGCTTGCGCCTGCATTTCACTTTAGATGGGCTCTGAATTGTAATGCACTGGCTCCTTTTATATAACTGTTATTCCGCAATCCCAAATTTTGCACAGTATTGTAACATAAACAGAAATAAATAGCACACTGTATCCCACTTGTTCACTAGTAACGTGATCATTTGTCATGAATCACAAAATACAAGAGAAGAACAACATGTGAGCTCTATTGTTCCATAAGGTTTTCCCTGACATAAAGCGACTGGTATGTATCTCAGTGCAATAAACGTGTGACAGTTTAGCCTATCTCTGTCTTTCTCTCTTTGTCATATACGCACCCTCATATTGTCTTTCTATGTAGGTCTAAATGGACTGAATTACTGCATAAACAACAATGCATGAACCCTTTCTCATGGAAAACCACAGTCTGGTGAGAGAGAGAGATCGTACATGCAGTTTTTATGAGGTTAGCTGTTACAGCTCAAAACCCTTTTCACTCTTAGCAATCAGAGAGGAACCTGCCTTCAATTACAACCAGAAAATGAATCCAACTGAATTCATCACACACTAAAGTAAACTAGAAACCTGCTACAGAAGGTGGTACGAGAGGCAAATATACAGTAAATGATCAAACAAAGATGGGTTTCTCTGAAAAATCCTGCTTCTTTCAATCTGTGTGGAAAGAAACAATACATCTGTGAATTCATGCACTGATTTTTTCCTCTACATACTGCAGATCTGCACAAAGAACACAACAGTACGAACAGACGTGCGGTAAACAGTTGGCAGTATCATGGCTGAGAAAAATGGGAGACTGTAGGTGAGAAAGAGAGAGACGGAGGGAGAAAAATCAAGCTGCTGCAGTATCCCTACACTGTTGAGCCTTGGACTGCGTGACTGACTGGTGTGTGGCGAGAGAGAGAGAGAAGAAGGGAGGGGGGATGGGAAGGATCTCGCTTGGATGAGGAGCAAGCAGTCAGGCAGGCAGCAGCATCATCTCTTTTGTGGCGAGCTGCTGAGGGAACTGGCCGCCTAGAGCCGTGTAGGGTGCTAACTCCTCGCAGGCGCGCACAGCGCCACCGCCTCTCCCGCACTGGCCGCCGCAGGGACAGCCTCCTTCACAGGCGTAGCACCGCTTGTTGCAGCGGCACCATGGCGCAAGCCGCTAAGCAGATCCGCAAGAACAAGGACCTACAGGAGCTCGCAGCCCAAGAGCTGCGAGAGAAGGAGGAGGAGAAGATCAAGAAGAGGAACCGATCGAGAGACCGCAGACGCAAGATACCACCTGACACAGGCTCCATTGTTTGTTGCGTTCCCTCTGTCTGTCATCGGCGTATTACATTACCTAGTGAATGCACATATCAATGCCGTAAGCGTGAACTTTGGCAGAACGTGAGCGTGATGTCTGCACCTGCCTCTGCCGCCCATTCTCATTACAGTTTGTATGATGGAGCTGAAGTGCATTATGGGAGCTCTGCTGCTCTGAGCCCTCTGGCTGCCTACTTACTTACCTTACCTTCCACAAATGTGCATTCGATGATGTATGGTCGCATGCATGCAGATTTTGGGTTTACACGAGAGCAGAGTCAATGTGGCGCAGTGATTGCTATTAAAAATGGCACTTCGTGTCAACAAGGATTGCCGACCCCTGCTCTATTTGGTGTCTTTGTGCTCCAGAAAACATGTCAGTTTCGCTGAGCCCTAAAAGTGTTTTGGATGGTTCGTGGCCTTGTGAGATTTCAGCTGTTGGTAGACAAACAGTTGTGTTGTGATTTTTACACCTCCCTGAGGTGGAGGGCCAGAGAAAAATGATGTCAAGTGCCCACAGTGTGAGACGCAGAAAAAATGGTTGTTTCGATTGGAATATCAGCACTTACAGCATGCTGAACAGTACACTGCATACTGTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50945 lncRNA upstream 12785 7063827 ~ 7064167 (+) True G44818
TU50944 lncRNA upstream 13168 7063521 ~ 7063784 (+) True G44817
TU50903 lncRNA upstream 81575 6992868 ~ 6995377 (+) False G44780
TU50904 lncRNA upstream 82089 6992868 ~ 6994863 (+) True G44780
TU50866 lncRNA upstream 100068 6976398 ~ 6976884 (+) True G44747
TU50918 lncRNA downstream 81550 7162480 ~ 7164707 (+) True G44794
TU50948 lncRNA downstream 92287 7173217 ~ 7173447 (+) True G44821
TU50917 lncRNA downstream 141992 7222922 ~ 7312257 (+) True G44793
TU50983 lncRNA downstream 233895 7314825 ~ 7315134 (+) True G44851
TU50984 lncRNA downstream 234281 7315211 ~ 7315553 (+) True G44852
CI01000006_07072315_07073358.mRNA mRNA upstream 3541 7071668 ~ 7073411 (+) True CI01000006_07072315_07073358
CI01000006_07066344_07070484.mRNA mRNA upstream 5697 7066344 ~ 7071255 (+) True CI01000006_07066344_07070484
CI01000006_06987083_06990215.mRNA mRNA upstream 86594 6987083 ~ 6990358 (+) True CI01000006_06987083_06990215
CI01000006_06955035_06961818.mRNA mRNA upstream 114747 6955035 ~ 6962205 (+) True CI01000006_06955035_06961818
CI01000006_06898410_06913888.mRNA mRNA upstream 163006 6898410 ~ 6913946 (+) True CI01000006_06898410_06913888
CI01000006_07121418_07160572.mRNA mRNA downstream 40239 7121169 ~ 7160825 (+) True CI01000006_07121418_07160572
CI01000006_07167131_07168925.mRNA mRNA downstream 85848 7166778 ~ 7168925 (+) False CI01000006_07167131_07168925
CI01000006_07194003_07196123.mRNA mRNA downstream 112792 7193722 ~ 7196355 (+) True CI01000006_07194003_07196123
CI01000006_07203185_07207649.mRNA mRNA downstream 122255 7203185 ~ 7207660 (+) True CI01000006_07203185_07207649
CI01000006_07208843_07212249.mRNA mRNA downstream 127550 7208480 ~ 7212838 (+) True CI01000006_07208843_07212249
TU49812 other upstream 948277 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 967364 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1305177 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 1952803 5117206 ~ 5124149 (+) True G41996
TU47110 other upstream 3340974 3734098 ~ 3734202 (+) True G41496
TU50906 other downstream 85859 7169829 ~ 7170534 (+) True G44782
TU51004 other downstream 275422 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 541061 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 802937 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 938412 8019342 ~ 8021951 (+) True G45336

Expression Profile