RNA id: TU50904


Basic Information

Item Value
RNA id TU50904
length 345
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G44780
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6992868 ~ 6995377 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGGATCTTGTAGCTTCCATGGGATGGTGTGTCTGGCCTGCTTGGTACAGGACTCACTTCTGACAAAAAGGTTGCCATCCTTTGTGTCTCATACTCTTGAGCTGCTTGAACTAGACTATTCCAGTCAAGATCATAGGCCATGCTTGGCAGGGGCATGAGTTCAGGATCAGGATGTTGGTCTCTGTCCCATACGTCAGATTCAGCCTGCTCAGGCAATTCCCCACATTCTAGGAAAAGACAACCAGTGAAATCCTCCAAAAATCTCTTCAAGACAAGGTAATACTAGTCGATGAGCAATTGATAAAACCATCAATATATATGTAAACCGGAACAGTAAAATAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50866 lncRNA upstream 15984 6976398 ~ 6976884 (+) True G44747
TU50876 lncRNA upstream 22052 6970504 ~ 6970816 (+) True G44755
TU50862 lncRNA upstream 29344 6945655 ~ 6963524 (+) True G44745
TU50206 lncRNA upstream 143711 6848942 ~ 6849157 (+) True G44210
TU50203 lncRNA upstream 145702 6846954 ~ 6847166 (+) True CI01000006_06847369_06848340
TU50944 lncRNA downstream 68658 7063521 ~ 7063784 (+) True G44817
TU50945 lncRNA downstream 68964 7063827 ~ 7064167 (+) True G44818
TU50918 lncRNA downstream 167617 7162480 ~ 7164707 (+) True G44794
TU50948 lncRNA downstream 178354 7173217 ~ 7173447 (+) True G44821
TU50917 lncRNA downstream 228059 7222922 ~ 7312257 (+) True G44793
CI01000006_06987083_06990215.mRNA mRNA upstream 2510 6987083 ~ 6990358 (+) True CI01000006_06987083_06990215
CI01000006_06955035_06961818.mRNA mRNA upstream 30663 6955035 ~ 6962205 (+) True CI01000006_06955035_06961818
CI01000006_06898410_06913888.mRNA mRNA upstream 78922 6898410 ~ 6913946 (+) True CI01000006_06898410_06913888
CI01000006_06853100_06858970.mRNA mRNA upstream 133435 6852831 ~ 6859433 (+) True CI01000006_06853100_06858970
CI01000006_06847369_06848340.mRNA mRNA upstream 144157 6847018 ~ 6848711 (+) False CI01000006_06847369_06848340
CI01000006_07066344_07070484.mRNA mRNA downstream 71481 7066344 ~ 7071255 (+) True CI01000006_07066344_07070484
CI01000006_07072315_07073358.mRNA mRNA downstream 76805 7071668 ~ 7073411 (+) True CI01000006_07072315_07073358
CI01000006_07078406_07080719.mRNA mRNA downstream 82089 7076952 ~ 7080930 (+) True CI01000006_07078406_07080719
CI01000006_07121418_07160572.mRNA mRNA downstream 126306 7121169 ~ 7160825 (+) True CI01000006_07121418_07160572
CI01000006_07167131_07168925.mRNA mRNA downstream 171915 7166778 ~ 7168925 (+) False CI01000006_07167131_07168925
TU49812 other upstream 864193 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 883280 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1221093 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 1868719 5117206 ~ 5124149 (+) True G41996
TU47110 other upstream 3256890 3734098 ~ 3734202 (+) True G41496
TU50906 other downstream 171926 7169829 ~ 7170534 (+) True G44782
TU51004 other downstream 361489 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 627128 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 889004 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 1024479 8019342 ~ 8021951 (+) True G45336

Expression Profile