RNA id: TU58135


Basic Information

Item Value
RNA id TU58135
length 235
lncRNA type intronic
GC content 0.35
exon number 1
gene id G51062
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1482718 ~ 1482952 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATGGAAGTCATTGGGCACCAAAACTATTTGGCTAACATTCCTCAAAATATCTTCTTTTGTGCTCCGCAAAAGAAAGAAAAGCATGCAGGTTTAGAAGACATGAGGGTTTTTGTCATAATTTTTGTCATAATTCCTACAAGTCCTTTTATATATTACTGGATAATGATTTAATTGTGCATTTTGGTGCACGCCAACATTATTGCTCCATTCCAGCTCTCAGTACTGGATAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58005 lncRNA upstream 2252 1446595 ~ 1480466 (+) False G50937
TU58040 lncRNA upstream 25525 1456337 ~ 1457193 (+) True G50970
TU58004 lncRNA upstream 29435 1449260 ~ 1453283 (+) True G50937
TU57962 lncRNA upstream 36741 1400316 ~ 1445977 (+) False G50926
TU58132 lncRNA upstream 130295 1352013 ~ 1352423 (+) True G51059
TU58186 lncRNA downstream 2312 1485264 ~ 1485620 (+) True CI01000009_01454610_01484907
TU58221 lncRNA downstream 174107 1657059 ~ 1657370 (+) True G51110
TU58243 lncRNA downstream 257660 1740612 ~ 1863136 (+) False G51125
TU58244 lncRNA downstream 257660 1740612 ~ 1863136 (+) False G51125
TU58245 lncRNA downstream 257660 1740612 ~ 1796482 (+) True G51125
CI01000009_01431700_01434463.mRNA mRNA upstream 48176 1430850 ~ 1434542 (+) False CI01000009_01431700_01434463
CI01000009_01402330_01407372.mRNA mRNA upstream 74963 1401061 ~ 1407755 (+) True CI01000009_01402330_01407372
CI01000009_01351236_01380055.mRNA mRNA upstream 102433 1351236 ~ 1380285 (+) True CI01000009_01351236_01380055
CI01000009_01219880_01224537.mRNA mRNA upstream 257849 1219637 ~ 1224869 (+) True CI01000009_01219880_01224537
CI01000009_01183737_01206031.mRNA mRNA upstream 275861 1182091 ~ 1206857 (+) True CI01000009_01183737_01206031
CI01000009_01570544_01595199.mRNA mRNA downstream 87127 1570079 ~ 1595466 (+) True CI01000009_01570544_01595199
CI01000009_01692563_01725364.mRNA mRNA downstream 209611 1692563 ~ 1725364 (+) True CI01000009_01692563_01725364
CI01000009_01733394_01738937.mRNA mRNA downstream 248342 1731294 ~ 1739468 (+) True CI01000009_01733394_01738937
CI01000009_01892219_01893628.mRNA mRNA downstream 409267 1892219 ~ 1893754 (+) True CI01000009_01892219_01893628
CI01000009_01897343_01919208.mRNA mRNA downstream 414391 1897343 ~ 1919516 (+) False CI01000009_01897343_01919208
TU57959 other upstream 44363 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 712485 769841 ~ 770233 (+) True G50920
TU57430 other upstream 1386931 94202 ~ 94283 (+) True G50472
TU58233 other downstream 197194 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 411283 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 772147 2255099 ~ 2350486 (+) True G51274
TU58708 other downstream 1579081 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 1719820 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060

Expression Profile