RNA id: TU58975


Basic Information

Item Value
RNA id TU58975
length 239
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G51766
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3773653 ~ 3773891 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGGAGAATCATCAACAATTGCGTCGTTGCTTAAAAATCCTTAAGCAGCTTACGTTAATATTAAATGAAATAAATGACATTAAAATTCAAAGTAATCACTTTGGTAATCTAAAATACTTTTTGAATGTAACTGTAATTTGATTACCATCTATTTAAAATGTAACTGTAACGAAATACAGTTACTCAAATTTTGTATTTTAAATACGCAACGTCGTTACATGTATTTCGTTACTCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58974 lncRNA upstream 642 3772751 ~ 3773011 (+) True G51765
TU58973 lncRNA upstream 4976 3768395 ~ 3768677 (+) True G51764
TU58963 lncRNA upstream 23708 3749624 ~ 3749945 (+) True G51755
TU58960 lncRNA upstream 30091 3743300 ~ 3743562 (+) True G51752
TU58959 lncRNA upstream 30392 3742964 ~ 3743261 (+) True G51751
TU58977 lncRNA downstream 4715 3778606 ~ 3778879 (+) True G51768
TU58978 lncRNA downstream 13946 3787837 ~ 3788070 (+) True G51769
TU58969 lncRNA downstream 16800 3790691 ~ 3795990 (+) True G51761
TU59002 lncRNA downstream 94909 3868800 ~ 3870486 (+) True G51792
TU59056 lncRNA downstream 215735 3989626 ~ 3990638 (+) True G51840
CI01000009_03760934_03761223.mRNA mRNA upstream 11814 3760934 ~ 3761839 (+) True CI01000009_03760934_03761223
CI01000009_03724620_03726787.mRNA mRNA upstream 46264 3723410 ~ 3727389 (+) True CI01000009_03724620_03726787
CI01000009_03689901_03697052.mRNA mRNA upstream 76183 3689330 ~ 3697470 (+) True CI01000009_03689901_03697052
CI01000009_03680266_03685634.mRNA mRNA upstream 87998 3680266 ~ 3685655 (+) True CI01000009_03680266_03685634
CI01000009_03650884_03661357.mRNA mRNA upstream 112296 3650884 ~ 3661357 (+) True CI01000009_03650884_03661357
CI01000009_03965885_03980591.mRNA mRNA downstream 191765 3965656 ~ 3981149 (+) True CI01000009_03965885_03980591
CI01000009_04168077_04171609.mRNA mRNA downstream 394186 4168077 ~ 4171609 (+) True CI01000009_04168077_04171609
CI01000009_04188754_04191658.mRNA mRNA downstream 414250 4188141 ~ 4192970 (+) True CI01000009_04188754_04191658
CI01000009_04193380_04194878.mRNA mRNA downstream 419489 4193380 ~ 4194902 (+) True CI01000009_04193380_04194878
CI01000009_04199761_04203673.mRNA mRNA downstream 425488 4199379 ~ 4203895 (+) True CI01000009_04199761_04203673
TU58746 other upstream 564669 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 565130 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 565347 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58745 other upstream 565729 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58748 other upstream 565729 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU60796 other downstream 1748351 5522242 ~ 5522356 (+) False G53388
TU60791 other downstream 1761354 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 2086411 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 2471673 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 5355409 9129300 ~ 9130286 (+) True G56100

Expression Profile