RNA id: TU58977


Basic Information

Item Value
RNA id TU58977
length 274
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G51768
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3778606 ~ 3778879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTTGTAACTGAGTGTTTATAAAACTCATTTGTTATAGCACAAAAGCCTAGAAAATATATGATCAGGTGTTGATGGATAGGTATTGATGGTGTTCATCATTTAGTGTCCTAATTCACTGTTCTCATTCAGAGCCTAGTTTCTGATTAAATGGATGATGTGTAATTAGTTTTCTTGATTATAGTGAAACTGTGATTCTACAGCTTAAGGGGCAGCAGTGTTGTGGCAATCAGATAAAGACTTTACAGACAGTTTTCATCTATGGCATCACTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58975 lncRNA upstream 4715 3773653 ~ 3773891 (+) True G51766
TU58974 lncRNA upstream 5595 3772751 ~ 3773011 (+) True G51765
TU58973 lncRNA upstream 9929 3768395 ~ 3768677 (+) True G51764
TU58963 lncRNA upstream 28661 3749624 ~ 3749945 (+) True G51755
TU58960 lncRNA upstream 35044 3743300 ~ 3743562 (+) True G51752
TU58978 lncRNA downstream 8958 3787837 ~ 3788070 (+) True G51769
TU58969 lncRNA downstream 11812 3790691 ~ 3795990 (+) True G51761
TU59002 lncRNA downstream 89921 3868800 ~ 3870486 (+) True G51792
TU59056 lncRNA downstream 210747 3989626 ~ 3990638 (+) True G51840
TU59070 lncRNA downstream 254721 4033600 ~ 4033823 (+) True G51853
CI01000009_03760934_03761223.mRNA mRNA upstream 16767 3760934 ~ 3761839 (+) True CI01000009_03760934_03761223
CI01000009_03724620_03726787.mRNA mRNA upstream 51217 3723410 ~ 3727389 (+) True CI01000009_03724620_03726787
CI01000009_03689901_03697052.mRNA mRNA upstream 81136 3689330 ~ 3697470 (+) True CI01000009_03689901_03697052
CI01000009_03680266_03685634.mRNA mRNA upstream 92951 3680266 ~ 3685655 (+) True CI01000009_03680266_03685634
CI01000009_03650884_03661357.mRNA mRNA upstream 117249 3650884 ~ 3661357 (+) True CI01000009_03650884_03661357
CI01000009_03965885_03980591.mRNA mRNA downstream 186777 3965656 ~ 3981149 (+) True CI01000009_03965885_03980591
CI01000009_04168077_04171609.mRNA mRNA downstream 389198 4168077 ~ 4171609 (+) True CI01000009_04168077_04171609
CI01000009_04188754_04191658.mRNA mRNA downstream 409262 4188141 ~ 4192970 (+) True CI01000009_04188754_04191658
CI01000009_04193380_04194878.mRNA mRNA downstream 414501 4193380 ~ 4194902 (+) True CI01000009_04193380_04194878
CI01000009_04199761_04203673.mRNA mRNA downstream 420500 4199379 ~ 4203895 (+) True CI01000009_04199761_04203673
TU58746 other upstream 569622 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 570083 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 570300 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58745 other upstream 570682 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58748 other upstream 570682 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU60796 other downstream 1743363 5522242 ~ 5522356 (+) False G53388
TU60791 other downstream 1756366 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 2081423 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 2466685 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 5350421 9129300 ~ 9130286 (+) True G56100

Expression Profile