RNA id: CI01000010_08740418_08742300.mRNA


Basic Information

Item Value
RNA id CI01000010_08740418_08742300.mRNA
length 1800
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000010_08740418_08742300
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8739386 ~ 8742300 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGCTATTAAACAAATATCCCGTGACAGAATTCAACAGTGGGCAAAACTGCCTGGTGGAGCAAATGCAGTCCCCATGGAGATCGCTCTCCTCCTGTGTCTGGGTGGAGGGTCGGGGTCGTTACCCGGTCACCGCGGCATCATCCGGATGCTCGACTGGTTCGAGATGCCGGGTCAGGGATATCTCATCGTGTTTGAAAAACCCCAACACTGCCAGGACCTGTTTGACTTCATCACTGAACGTGGGGCCCTGGAGGAGCCCATTGCACAGAGGTTCCTCAAACAGGTCATTGAAGCCCTACAGTTCTGCCACTCCAAGGGAATTGTACATCGGGACATCAAAGATGAGAACATCCTTGTTGACGTCCGCACCGGTGACATCAAAATCATCGACTTCGGATCCGGTGCTCTACTTAAGGACTCCATTTACACTGACTTTGAAGGTACCAGAGTCTACAGCCCTCCAGAGTGGATCCTCCACCAGCGTTACAGCGCTCGTCCGCTCACTGTGTGGTCACTGGGCGTACTTCTGTTTGACATGGTGTGTGGAGACATTCCCTTTGAGCGGGACGGCGATATTGTACAAGCCACTCCGAGTTTCACTAAACGCATCTCCAAAGAATGCCAGTCTCTGATTCGCTGGTGCCTTTCATACAGGCCAGAGGATCGTCCGAGTTTGGAGCAGATTTTGCAGCACCCTTGGATGACGGAGACTTCTGAGGATATCGGAGATTTGCATGCGGAAAGCAATATTAAGCCAAGCCTTTAAATCCTGAAGGACTTTGGACTCGATTTAGAAATTTCCCACACACTGTTTCGTTTTACACTGGACTTACTGAACTCTAGTTGCTGGCTTCTGGATTCTTCCTTATTTATTTTTGTTTTTTGTTTACGTTTGTTTTGTTTTATTTGGACTTGGGAATCTGTGCCTGAAAATAACCCTGGATTGATGCCGTTTTACTTTATGAGTGAAAATTTCCCACGACTACAGCTCAGCGCAACAGCGGGAAATGTTACTTTTCTTATTTATTGCTGATTATTTATTTTTTTTCAGCCACGTACTAATTTATTTCTGCACTCTATGGTTCATGAAGTTTCGGAAGCAGCAAACTGTGTTCGTTTTGTTTGTCTGTTTGTGTTGTTTCAAGTTCGAACGGACTTAAATGACAGTGGGTGGACTTGCAGTTACTGATCGGACTGCGATGATACCTGGTTTTACAGGTTTTTTGCTGTACAGTGATATTCTCTCCCTGTTCTAAGGGGTTTCAAAAAGACCGGATCTGCTTTCCAGTCTTTTGATGGGAGGCCTGGTGTAACAATAATTCAGGCTCACGTGGATCTCTTCCCATTTATCAACACACACTCTCAAAGAAGGTGCGACAGAAGAGAAGAGGAACATTCCTGTGGATCCTGTTTACTCTAAATGAACCAATTCACTAGATGGATTCCTCAGAGCCATTAGCTAGCCGGCTTTTGGTTTCTGTCGGTATTGTTTGTGAAATACCTGCGCTGTAACTTAAAGAATGTTGTCAGGACGCTTTGTGCTGAAAATGCCCAGATATGTGTCATTTTGTTGGAAGTTCTCAAAGGTCAAAGTGTTGACTAATGTTGTGAGGGCTTCAACCACTAACCCACTATTGATGTTTACTAAAAAGGGCCAAGTGAGCTTTTCCTAATTGATTGATTACATTATAACACACCAAAGAGATCAGCCTTACTGCTTTATGTGAGGTAAACATGCATAATGCAAAATACTTTTGATTTTGATTTGAAATGCAGACCAAAGTTTGGGTTAAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04702 PIM1; proto-oncogene serine/threonine-protein kinase Pim-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76459 lncRNA downstream 9965 8634018 ~ 8729421 (-) True G67113
TU76328 lncRNA downstream 332641 8404540 ~ 8406745 (-) True G66992
TU76320 lncRNA downstream 340646 8398519 ~ 8398740 (-) True G66984
TU76316 lncRNA downstream 349904 8389192 ~ 8389482 (-) True G66980
TU76303 lncRNA downstream 374177 8364466 ~ 8365209 (-) True G66968
TU76511 lncRNA upstream 200292 8942592 ~ 8942826 (-) True G67156
TU76630 lncRNA upstream 345585 9087885 ~ 9088109 (-) True G67262
TU76633 lncRNA upstream 347275 9089575 ~ 9089829 (-) True G67265
TU76581 lncRNA upstream 409221 9151521 ~ 9153635 (-) True G67213
TU76615 lncRNA upstream 625950 9368250 ~ 9522516 (-) True G67247
CI01000010_08725595_08733769.mRNA mRNA downstream 5617 8724967 ~ 8733769 (-) True CI01000010_08725595_08733769
CI01000010_08694007_08717153.mRNA mRNA downstream 22233 8693991 ~ 8717153 (-) True CI01000010_08694007_08717153
CI01000010_08624504_08629844.mRNA mRNA downstream 109542 8624342 ~ 8629844 (-) True CI01000010_08624504_08629844
CI01000010_08586563_08587030.mRNA mRNA downstream 152356 8586457 ~ 8587030 (-) True CI01000010_08586563_08587030
CI01000010_08381760_08382057.mRNA mRNA downstream 357063 8381453 ~ 8382323 (-) True CI01000010_08381760_08382057
CI01000010_08745022_08776416.mRNA mRNA upstream 2452 8744752 ~ 8776987 (-) True CI01000010_08745022_08776416
CI01000010_08780538_08783770.mRNA mRNA upstream 37971 8780271 ~ 8783770 (-) True CI01000010_08780538_08783770
CI01000010_08821963_08829108.mRNA mRNA upstream 78171 8820471 ~ 8829108 (-) True CI01000010_08821963_08829108
CI01000010_08836289_08837480.mRNA mRNA upstream 93853 8836153 ~ 8837480 (-) True CI01000010_08836289_08837480
CI01000010_08846524_08862740.mRNA mRNA upstream 103605 8845905 ~ 8862740 (-) True CI01000010_08846524_08862740
TU76444 other downstream 64489 8641690 ~ 8674897 (-) True G67099
TU74478 other downstream 841268 7842636 ~ 7873650 (-) True G65441
TU74496 other downstream 1067043 7663691 ~ 7672343 (-) False G65453
TU73887 other downstream 2642906 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 2822375 5916257 ~ 5917011 (-) True G64877
TU77386 other upstream 3186661 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 3222565 11968202 ~ 11968254 (-) True G67957

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069571 False 2486 mRNA 0.42 7 NC_007119.7 8927870 ~ 8934069 (+)