RNA id: CI01000010_08745022_08776416.mRNA


Basic Information

Item Value
RNA id CI01000010_08745022_08776416.mRNA
length 3289
RNA type mRNA
GC content 0.51
exon number 16
gene id CI01000010_08745022_08776416
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8744752 ~ 8776987 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGTGAAACATGATTTGGGTTACTATAACCATTTTACTGTTTACATGACTATCATGTGTCAAATCATATTTTTTAAAGATATAGATATGTTTGAAGACAAAGGGTATTTGGCACTTTATGCTTGTTTGGCTCTCCAAGAGTCCACATACAATGATCTGAATTCCACTGTCACCAGTTTATTTAGATTTAAAAAGTTCATAAACATTCATAATAAATATATTATAGTCCAGAGGTGGTCCTTAAAGTGCTGACCAGCAAACAAAATACATGAATGTATGGATGAATGAACAATTCAACTGACAGCTTCCGAAGCAGAGCACAGGAGAGGCGGAAATGACGTGATGGTGTCGTCAGCTGTATGTTGATGTTGTGTGGCAACAGTAGGACAGAGGGACGGAAGACGGTTTGTTTTTGTTCTGTTATCCGCTGTTTTTACCCTCAAAACCACCTCTTGTTGAATTAAATTCGCTCCGGGGTGAAAGGAGCAAACATTACGACCCAAAAGACACTCAAGTTTAAATGTTAAAACGCGTTTGGAGTCGTTAAAACGGACACCCTCCCTGAACGGTCATGACGATCCTGCCGAAGAAGAAGCCGAACTCGTCGGTCGGTGTGTCTGATCATCCCGACGACCCCGACCGCCGGACCGGCTCCGACCCGCATCAGCACCAGCACCAGCACTCCCACGGGGTCCGTGCGGGTGCGAGGCCCCGCGCTTCCCCGCCACCTTGGTCGTATCAAGCCGCTCCGCCGGCGTCCAGAGAGGACAGGCGAACTGAATCCAGCTCCCGGCCGCAGCAGGCCTCTCCTCCGCCGGTGGGCGCCGGGTCTCCGGTTGGCCCGGGGGATGCGGCAGGGATGGCGTGTGTGTCCGGGGGTCGGGCTGAGCTGTCAGGTGGGGTGGGCTGTGGAGGTGGGATGGGAGGGTGCTGTTCAGGGCCTGGGCTCAGTAAGAGGAGGAGACAGGCTACCTGCTCCGGTGGGGTGGCCGGCGGAGGGACCGGACCAGGGGCGACAGGGGGAGGAGGCGGTGGTGGTGGAGGAGGAGGGGGTCCCAGTCCCGATCAGGAAGAAGGAGCCGGGTATAACAGTGAGGATGAGTATGAGAATGCTTCCAGACTACAGTCAGAGGATCCAGCGACTGTTGAACAGCAGGAACACTGGTTTGAAAAAGCACTCCGGGAAAAGAAAGGATTTGTCATCAAAAAAATGAAGGAAGATGGTGCCTGCCTCTTCAGAGCTGTTGAGTTTTATGCAGGATTTGAAAGACAGGCATGTGATGTGCTGACCTACATTGAAGCATTCCCATCAGGGACACTGTGCCACAGTTCTTGCACCGCAGTGCCAGCTGTGCATTTTATCAAAGACTCCCTCTTTCCGGGCAAATCTCGATACTGTGAGATAAAAGCGCCCAACTTAGTGACCAAAGCAGATGCCGTAAATTCCATAACACGATTTGACAGAGTGGCAAATGCCGGGCCCTCTCTCGAAGCGAAGAATATAGAAAACATTCTCATCACCGACACTTGGCATTGTCTCTTACAAAACCAAGCTGTTGATGAAATCGTTTTGACACATAATTCAAGTCTGGAGTTTACGCTAGAGTGTCAGTGTTCCTCTGTGACCTGCATGCGATATGCCAGTAGACAGCATGCCTGGTTGCAATACAGTCTCCCGTCGAGGTGGACGTGGCCTGTTAGATGTTCTTGTGACCGTAGGAGACAAGGAGCACATGAGAGTGCAGGTCACAGAGCGGTGACCTCAGCTCTTTCTGGATGGACTATGCAACTCATGTTCCACACGGTCATATTTGGACACAGGGCATCAAGGATAAACCTTATCGATGACCGACAGACCTCAAGGGCAGGTCTGAGCTCTCTCTTCTCTTCTCTGAGTCTAAACTTGGCCTGCCCCTTTCTTAGAATCGAGACGCTATCTGCAGCCTACATTAGTGGAATACCCACTGACGAAGGGTCTGGTTATCCACTGCGCTGTGCTGCAATGAATGGAAAGGCTGATCAGGTTTACGGAGACCAGGATATGCACGAAGTCGTCCGCAAACATTGCATGGATTACTTGATGAAAAATGCAGATTACTTCTCAAACTATGTGACAGAGGACTTCACTACATACATCAACAGAAAGAGGAAGAACAACTGTCACGGGAACCATATTGAGATGCAGGCTATGGCGGAGATGTACAATCGGCCAGTGGAAGTTTATCAGTACGGCACAGAACCAATCAACACGTTCCATGGCATCCATCAAAATAATGACGAGCCAATCAGAGTTAGTTACCATCGGAACATTCACTACAACTCAGTCGTGAATCCCAACAAAGCCACGATTGGAGTTGGGCTCGGACTTCCTGCCTTCAAACCAGGGTTTGCAGACCAGTCACTCATGAAGAATGCAATTAAAACATCAGAGGAATCCTGGATTGAGCAACAGATGCTGGAGGACAAGAAGAGGGCCACAGATTGGGAAGCCACCAATGAAGCCATAGAAGAGCAAGTGGCCAGAGAATCGTACTTACAGTGGCTTCGAGACCAAGAGAAACAGGCACGTCAGCCTCGTAAGGCCAGCGCTACGTGCAGCTCCGCCACGGCTGCGGCCTCCAGTGGTTTGGAAGAATGGAATGCCCGATCTCCACGGCAACGCAGCTCCGCCCCCTCTCCGGAGATTCCTGATCCTTCGCATTCGGACACACCCGCTAAGCCCCCCTCCCCGGCCGGAGCGGCCCTCACACTCTCCAAACCCCCGTCACCCTGTGCACCAGGTCCCAGTAACCAGGCTTGCGTCGGACCAGACAGACCCACCTCGTCTTCTCTGGTGTCTCTGTATCCAGCACTGGGCTATCGGGCCATTATGCAAGAGATGTCTCCTACTGCTTTTGGCCTAACAGACTGGGAAGACGATGAGATATTGGCGTCCGTCTTGGCCGTGTCACAACAGGAATACCTCGATAGCATGAAGAAAAACGCCATGCATAGAGAACCTTCTCCAGATAGCAGTTGATAAAGGAGGGTTGAGGCACAATCTGCAGTCGAAGCAGGAGGCAGATACATGGGGATCAAACCAATCACATTCTCTCCATCATCATGCAGTTCATACTGTCCTTCCTTTCCTTCACCTATCCATCCATCAGTTCATCACTGGCCTCAGCCATCCAGCAGTAATGGCCCATTGTTGTGATACTCACCTAAACACTCCTTTTCTTTCTTACGCCATTCACACCATCATCATCATCATCATCATTGGACTTCTTTAAGTGCATGTGAAAATAAA

Function

GO:      GO:0072607, GO:0071108, GO:0061578, GO:1905077, GO:0008233, GO:0008234, GO:0043161, GO:1990380, GO:0036459, GO:0006508, GO:0016579, GO:2000316, GO:0070536, GO:0016787, GO:0101005, GO:0032496, GO:0072619, GO:0032480, GO:0004843, GO:0072540, GO:0005829, GO:0031647, GO:0005575, GO:0005515, GO:0043374

KEGG:

id description
K12655 OTUD5, DUBA; OTU domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76459 lncRNA downstream 15331 8634018 ~ 8729421 (-) True G67113
TU76328 lncRNA downstream 338007 8404540 ~ 8406745 (-) True G66992
TU76320 lncRNA downstream 346012 8398519 ~ 8398740 (-) True G66984
TU76316 lncRNA downstream 355270 8389192 ~ 8389482 (-) True G66980
TU76303 lncRNA downstream 379543 8364466 ~ 8365209 (-) True G66968
TU76511 lncRNA upstream 165605 8942592 ~ 8942826 (-) True G67156
TU76630 lncRNA upstream 310898 9087885 ~ 9088109 (-) True G67262
TU76633 lncRNA upstream 312588 9089575 ~ 9089829 (-) True G67265
TU76581 lncRNA upstream 374534 9151521 ~ 9153635 (-) True G67213
TU76615 lncRNA upstream 591263 9368250 ~ 9522516 (-) True G67247
CI01000010_08740418_08742300.mRNA mRNA downstream 2452 8739386 ~ 8742300 (-) True CI01000010_08740418_08742300
CI01000010_08725595_08733769.mRNA mRNA downstream 10983 8724967 ~ 8733769 (-) True CI01000010_08725595_08733769
CI01000010_08694007_08717153.mRNA mRNA downstream 27599 8693991 ~ 8717153 (-) True CI01000010_08694007_08717153
CI01000010_08624504_08629844.mRNA mRNA downstream 114908 8624342 ~ 8629844 (-) True CI01000010_08624504_08629844
CI01000010_08586563_08587030.mRNA mRNA downstream 157722 8586457 ~ 8587030 (-) True CI01000010_08586563_08587030
CI01000010_08780538_08783770.mRNA mRNA upstream 3284 8780271 ~ 8783770 (-) True CI01000010_08780538_08783770
CI01000010_08821963_08829108.mRNA mRNA upstream 43484 8820471 ~ 8829108 (-) True CI01000010_08821963_08829108
CI01000010_08836289_08837480.mRNA mRNA upstream 59166 8836153 ~ 8837480 (-) True CI01000010_08836289_08837480
CI01000010_08846524_08862740.mRNA mRNA upstream 68918 8845905 ~ 8862740 (-) True CI01000010_08846524_08862740
CI01000010_08878920_08926849.mRNA mRNA upstream 101842 8878829 ~ 8927698 (-) True CI01000010_08878920_08926849
TU76444 other downstream 69855 8641690 ~ 8674897 (-) True G67099
TU74478 other downstream 846634 7842636 ~ 7873650 (-) True G65441
TU74496 other downstream 1072409 7663691 ~ 7672343 (-) False G65453
TU73887 other downstream 2648272 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 2827741 5916257 ~ 5917011 (-) True G64877
TU77386 other upstream 3151974 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 3187878 11968202 ~ 11968254 (-) True G67957

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069569 False 2312 mRNA 0.53 9 NC_007119.7 8860902 ~ 8922631 (+)
bowfin (Amia calva) AMCG00009708 True 1017 mRNA 0.65 8 CM030126.1 44738679 ~ 44746329 (+)