RNA id: TU73964


Basic Information

Item Value
RNA id TU73964
length 2365
lncRNA type antisense_over
GC content 0.39
exon number 6
gene id G64981
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6729558 ~ 6735582 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTGCACTTTGACGTTTGAAACCTTCAGTTGCCACTCATTGGAAAAGAGCAAACAGTACAATACTTTAGAATTTGTACCTTTTGTATTCCTCAAAAGAAAAAAAAGGGGATCAAAATTACAGAATTTTCGTTTTAACCCTTTATGCTTATGAGGAAAAAGAGGAACTGAATGAAACTGCCATCTTGAACCAAGCCTGTAAAGTCATTTTACTGCTTAATATTCCAAGATTAAGAGCTTATTATGATAATTGTGCTACATTCAACAGTAGTTTCAGTTCTGATTATGCAACTGTAATTTAGAAATGGCATTTTAATAACAGTTCATGGTAAATTTACCAGCACTGTTGTCTATTATTTGATGTAAGAGCGCCAGCAGAGACTGTAATCTCTGTGTATGGAGCGCCACCAAGTGGCCATATTTAAAACACACACTATGCCATAACTGAGCTGTTGAATCACATTTCTTGTGCTAGGCTCTGGGCACAGTTTGATGGAGGTGTTAATAGGTCTCTGCTGCACGGTAAAGCTGTTTATTTGGGCTTTGCAGGCTCTTGTTAACTTAGACTACATCATGGCCTTTGCAGAAGGAACAAAGTTGAATTAAGGTCAATGTTGCTGCTCACACAGGTCTTGCAAAAGAGACCAAACAACTGCCAAACACTTTATTAAGCTGCCAGTGATAATCAACACATGACAGGAGATGTAGCCAATTGGCCAGAGGTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGTTCTCGCATATGTCAGAATCTAGCAAAACAGTTCTGATTGTGAATAAGAATATTCTGAGGAACTATTACAATTTGATGCTATGCTAATAATCCTTATTTTCACAAAAATTAAAAAAATAAAATAAAACACTAATAAAAACAGAAACTGCACTCCTGCACAGTTCATACATGTTGGAATATTTGCAGTTTTGTGCTTGTGGGAACATCCGTTGTTGGATCCAAAGTTACAAAACAAATGGTTCAGTGAATATTGCAGCAGAATGACTCGACACCTGAGAGTGTGAAAGGCGGGTCACAGACAGCTGACAAAATGTTTTTACTTTTTATGAAGTGCTCTTCACATCACCTGCACTCACAACATGACCACTTTGTCTTTATCTGCATGATGAACAATATTGATTACAATTACAAAATATTACAATTAAAAACAACAATTATTTACAAAGGAATACATGTATGTCATATTTCTAAACACAATAACAGTATATTTACAGTATAAACAGTTTGTCATAAACATTATAAAGCCTCAAAATGCACAGAATGATGTCTGCAGATATTTGCATATGAAAAAAACCTATTGTGCCTAAAGTCTTCTGTCGTTTTCCTGTACAGCACGCCAATATATATCATCCACTGACTCTGTCCTCGCGTCTTTGGAGCTCAGGTAACCAAGGATGGAGTTAGCAGCCCAGAGACTGACCCCTACTAGGCAGAAACAGAGATGTGGGGTTTTCCACACTGATGTGGTGAGCTGGGTGTGGATCATGAAGACGACAACCGCCAAAGTCCCCACAGCTCGGCTGCTGAAGACAGATACCTCATTGGTTGCCATTTGTTTCTGAGTGGTAAAAGAAACAAAGCTGTCTCCAACCATCATGGCTCCAAATGCACGTGTGAGATGAAGATTATCTTCAGATCCACTAATCTGTGACCCAAGTAGCCATCCTGGAAAAACCAACCACATGAGGCCAAAAATGAAGTTGGCAAAAAAATCCATTTGAAGGAAAAACCTCTGGGGTTTAGTGAGGCGTTCAGATCGTTTCAAAGAGCCTTGCAACTGATTGTGATCCAAGATCAAAAGAATCAAAGTGCTTAGAAGAAAGAACAAGAACACCGCCACATCCACCATGGGAAGATGTCTACGATCTCTTCCTTGAATGTGTCCTTCTTTGCAGACTCCAAACAATGAAAGGAAAGCCACAAGCCTTGATATGGAATGAGCTGAAAGAGAAAGTGGATGGTTGTTGCTTTTGAAGAAAATGAACTTAACATTACTGGCAACCCACACACACACGAGTGAGCGCGTTACTTCAAACTGCGCGCTTCCGTCACTGACGCTTTCTCCCTCTGAGGAAAAAGCCAAACTGGAACACATCCGATAGGCAATGCTGAGTAGTAGTCCTACCACAAGTTCGGCTGAAATTACTTGACTTCCAATTACTTTAATCTTGGTCGTTTTCATGTTTGGTTCACAGTCCGAGGTTGGGGGTCAAATCAAAGTTTTCAGTGCGACGAAGATTTGTAGCCCGCTGGCTTCCAAAGATCTCATACGTCAACCCTTACACAACCTAATTATGAAACTCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73951 lncRNA downstream 1067 6547764 ~ 6728491 (-) True G64969
TU74076 lncRNA downstream 81388 6647532 ~ 6648170 (-) True G65082
TU74038 lncRNA downstream 196902 6496859 ~ 6532656 (-) False G65047
TU74033 lncRNA downstream 210397 6497634 ~ 6519161 (-) True G65047
TU74042 lncRNA downstream 218938 6507831 ~ 6510620 (-) True G65049
TU74098 lncRNA upstream 6162 6741744 ~ 6804348 (-) True G65102
TU74127 lncRNA upstream 209597 6945179 ~ 6945596 (-) True G65131
TU74128 lncRNA upstream 211809 6947391 ~ 6949007 (-) True G65132
TU74178 lncRNA upstream 216756 6952338 ~ 6952745 (-) True G65177
TU74199 lncRNA upstream 244688 6980270 ~ 6985825 (-) True G65189
CI01000010_06704532_06716191.mRNA mRNA downstream 13367 6704422 ~ 6716191 (-) True CI01000010_06704532_06716191
CI01000010_06690142_06698430.mRNA mRNA downstream 31016 6689995 ~ 6698542 (-) True CI01000010_06690142_06698430
CI01000010_06681043_06685375.mRNA mRNA downstream 44183 6680763 ~ 6685375 (-) True CI01000010_06681043_06685375
CI01000010_06639960_06641129.mRNA mRNA downstream 88419 6639580 ~ 6641139 (-) True CI01000010_06639960_06641129
CI01000010_06625010_06627729.mRNA mRNA downstream 101829 6624190 ~ 6627729 (-) True CI01000010_06625010_06627729
CI01000010_07013266_07023918.mRNA mRNA upstream 277498 7013080 ~ 7026333 (-) True CI01000010_07013266_07023918
CI01000010_07051047_07053923.mRNA mRNA upstream 315211 7050793 ~ 7053923 (-) False CI01000010_07051047_07053923
CI01000010_07128701_07132022.mRNA mRNA upstream 393080 7128662 ~ 7132068 (-) True CI01000010_07128701_07132022
CI01000010_07135276_07196633.mRNA mRNA upstream 398809 7134391 ~ 7196633 (-) False CI01000010_07135276_07196633
CI01000010_07320443_07334877.mRNA mRNA upstream 584234 7319816 ~ 7334993 (-) True CI01000010_07320443_07334877
TU73887 other downstream 633078 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 812547 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 1486632 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 2116002 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 2493142 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 928109 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1107054 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 1906108 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5193379 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5229283 11968202 ~ 11968254 (-) True G67957

Expression Profile