RNA id: TU74076


Basic Information

Item Value
RNA id TU74076
length 537
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G65082
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6647532 ~ 6648170 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCTGTTTGACTTCTCAAACCTTGTGTGAAGTGAAAACTCTCCACATCTATTTGTCCTCCGTCACAGGGATACAGAGACTGAACTTTGCCAGTGACCTGCACCAGTTTCCCATTTAAACTGTATCCTGTGAATACCTATGTGAAATACACAAACATTTAGCCAATTAATTTCAAATTTAGCACCATCAAATCTACATTATAAGTAGTTTATGTGGTAATATATTTTTCAGACATCTGTTCTTCTCTCATTTGCTGGTTCTTGAGGCGTCTCTAGAACATCTCTGGTTTTGTCTCTATTCACTGTAGCTGAGCTGGGTGTTTTGGACATATTGTCTCTACTCTTTCTTGAGGACAGTGGAGTCTTCTTGTTCTCTTTTACCGAGTCGATTCTCTCTCCTACTTTTGGTGTTGCTTTTCCTCCTTTTTCTCCTTTTTCTTTCTTTGTCTTTTTGGATTGCTCCTCCTCCTTTAGTCTCTCCTGCTCGATTTTCCATGCTTTGAGAGAATCCTCTCTTATATATGGTTCTAATGTGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74038 lncRNA downstream 114876 6496859 ~ 6532656 (-) False G65047
TU74033 lncRNA downstream 128371 6497634 ~ 6519161 (-) True G65047
TU74042 lncRNA downstream 136912 6507831 ~ 6510620 (-) True G65049
TU74032 lncRNA downstream 147378 6497634 ~ 6500154 (-) False G65047
TU74029 lncRNA downstream 151587 6495479 ~ 6495945 (-) True G65046
TU73964 lncRNA upstream 81388 6729558 ~ 6735582 (-) True G64981
TU74098 lncRNA upstream 93574 6741744 ~ 6804348 (-) True G65102
TU74127 lncRNA upstream 297009 6945179 ~ 6945596 (-) True G65131
TU74128 lncRNA upstream 299221 6947391 ~ 6949007 (-) True G65132
TU74178 lncRNA upstream 304168 6952338 ~ 6952745 (-) True G65177
CI01000010_06639960_06641129.mRNA mRNA downstream 6393 6639580 ~ 6641139 (-) True CI01000010_06639960_06641129
CI01000010_06625010_06627729.mRNA mRNA downstream 19803 6624190 ~ 6627729 (-) True CI01000010_06625010_06627729
CI01000010_06588155_06615737.mRNA mRNA downstream 31795 6587220 ~ 6615737 (-) True CI01000010_06588155_06615737
CI01000010_06504062_06505040.mRNA mRNA downstream 142256 6503983 ~ 6505276 (-) True CI01000010_06504062_06505040
CI01000010_06456276_06481282.mRNA mRNA downstream 166105 6456276 ~ 6481427 (-) True CI01000010_06456276_06481282
CI01000010_06681043_06685375.mRNA mRNA upstream 32593 6680763 ~ 6685375 (-) True CI01000010_06681043_06685375
CI01000010_06690142_06698430.mRNA mRNA upstream 41825 6689995 ~ 6698542 (-) True CI01000010_06690142_06698430
CI01000010_06704532_06716191.mRNA mRNA upstream 56252 6704422 ~ 6716191 (-) True CI01000010_06704532_06716191
CI01000010_07013266_07023918.mRNA mRNA upstream 364910 7013080 ~ 7026333 (-) True CI01000010_07013266_07023918
CI01000010_07051047_07053923.mRNA mRNA upstream 402623 7050793 ~ 7053923 (-) False CI01000010_07051047_07053923
TU73887 other downstream 551052 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 730521 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 1404606 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 2033976 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 2411116 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 1015521 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1194466 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 1993520 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5280791 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5316695 11968202 ~ 11968254 (-) True G67957

Expression Profile