RNA id: TU74033


Basic Information

Item Value
RNA id TU74033
length 3254
lncRNA type read_through
GC content 0.38
exon number 5
gene id G65047
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6496859 ~ 6532656 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGCTAAGGCGCTTGCGTTTCTCGAACAGCACCCTCCGGTGCCCGAGCTTATAGCCAATGTCCTTGTTCTTCTTATGCGGAGCGCTGCATGGTCTTTGCCTCACAAGGTTCTCGCTGGACTGCTTACTAGGGTCTTCCCCGTTCCCTTTGGAGACCACCACCTCCAGGCCGGAAGAGTGCAGGGTCTGCAAAGGCTGTGTCTCAGAGTCCAGCTCTGCTAGGTTCCTCCGGGACGCCCCCAGACTGCCGAGTGGTCTGACTATGCCCCCATTGTACTTGCAGCTGTTCATGGCTATCTGAGGATACTGTGGGCCGCCGTGGGACAGGGAAGGCCGTGATCCAGCATGGCTCAGCCTGTTGGCATCCGCATTCACCTGCCAGAAATGAGAAGATATTTTATAGATTTTATCATTGTTTTTTGTGTCCAGGATCTTGTGTACTGGCTGAGAGGGACAGCACTGCCAATTCGCAACAATGCTTGATTTAATGGGCATTCCTTTAGAAAATTACATTATAAATGCCAGCATCTACAGGGTTCATAATGCATGATGGAGGAGGGTCATCTACTGACCGTAACTACTGAAAAAGCTTTCGGGACTGAGTGCTGATGTCAATGAAGGTGATGCCAAAGTTTGGAGTTGAACTTCGGAGTGGATCTGGGGCGCAGATGAAGGAAGCTGATGCTCTTTTGTATGAAGAAACGCATGTTCCTGTCTAACAGCGAGAGAGAGAGATGGAGAGGCCCTGTCACAAGCAGATGAGTGTTCATTACTTTATCCTTGACGGGGGGTTTGGGCAGAGGGAAAGAGATTTCACGCTAATTTGTCGGATGACACCTTAGCCATTTACAATATATATATATATATAAAACAAACAGACCATAAAACCTTTGATAACACTTTGGCCTTTTTTAATCACACCTACAAACACAATTTTTAGCATAACAGGTAACTTGTGATTTAATATCTCCCTATATACCATGAAAGAGATCAAAATTGGTGGATGTTAAAACAAAATTAAAAGGATGAATAGCATGTCTGTCATTAATATAAAGGATATTTCAATCATGCGTCATGTACAATAGAGTACAGCTGTCGAAAAAAAAAAAAAAATTATGATGATCTGATTTGAGCAAACAGTTTGTTTAAACGGCATCACTTTACAATAAGGTTTTACTTGTTAACATTAGGTAACCACATTAATTAACATAAACTATTGATAAACAATACTTCTACAGCATTTATTAGTTAATATGTAAACTAACATGAACAATGAACAACTGTATTTTTATGAACTAACATTTAAAAAGGTTAATAAATGCTCTAAAATATATTGCTCATCATAGTTCATGTTAACTAATGTTAACAAATGAGGCCTTATTGTAAAAATAAGAGTAAAATCTACCAGAATGCCTAAAATATATGTAAACATATTGTACAGAAACTACTCAAAATAAAGTCATTTTATTTAAAAAATGTTTCTAGCATTTGCTCAAGAATGACAGCTGTTTATTAGAACTGTAATTGCTGAATTAAGTTTCCAAAAAGCCCAATCTCTGCATATAAGATGGGGTCTGACATATAGGTTAAAAAAAACTTTCAAAAAGCATTAATAATTGTAAACTGAGGCATCCTTACCTTAAAGCAGCATCCTTCTTTCCTTCGGCAAGCACGCTAGACTCGGGTCCCCTAACATACATGAGGTGTGAGTGATGGGCGCTTTTTCGAGAAAACAGGATTTAGTCATCAGACATGCAGCTTTTTCCTCAGACGCTTGTCAGATGTAGGGGGCCGGCCGGTCTCTCTTTGAGACGCATAATTAGGATGCAGGCTGAAGAAAGGACAGCCCAGCTTGATAAGGGTTGGCATGCAAATGGATAAGGAGACAAAGAAGCACAGAGAGAGAGAGAGAGAGGGAGAGCAAAACACTATATGTTGCACACACCACAACACTTTCTGCTTTAAGTGTCGGGTATCATTATTGCGTCCACTGCTCAGGTTGGCTGAGGTAGTCGAATACATTGAGGTCCGCAGATGAGGAAATCGAGGAGAGAGAAATCTGCGATTGATGCTCAGCAGTTCAAAGGCCTTCCCAAACCCTCTTATCTTTCCCGCCACAGAGGCAGCTCAGATAAAAGAGGAACACACATCACACCAAGCGTTGGACGGAAACATGGATGTTGAAGATGTACATGTACACAACCAGCAGTGTTCAGTGCATTAAAGATGACATCTCTTCTCTTCTCTGATGACGTGTTTACCGGATTGAGGGCGGGACAACCTGTCACTCACATGACATCACAGCAACAGCAAACCACAACCATCAAATCAATTCCTGATTGCCAAAATTAAGTCCTGCCCTACATTTTATCTTGTTTGACAAGCCGTTTCGTTCAGATATAAGTCAGTATAGGGAAGAAAAGCCAAATTCCGTTTCATGCTGACTTTAAGATTGCAGTGAAGAGGGTTTTGGGATTGAAATATGGTCATTTTTGGTTCATGCTTGTCATTAAATAATTTAGCAATGCTAGAGGGACATGGTATAAAATGTGGTAAAATACAGTGGGGCCTAAAAAAAAGGCAACAACTGAAAATGCTTCTGTTTTGCATTTTTCTATTTTTTTTATTTTTTTTTTTAAATGAAAAAAATAATTACAAAATATGTTTAGCATGTTTCTAATAAAATATGTTTTTATTTTTAAATGTAAAAAAATGTTTTGTTATTTTTGGTTAATGGTTGTCACTAAATAATTTAGCAATGCTAGAGGGACACTGTATAAAATGTGGAAAAATACCATGGGGCCACTGATCTATAGTGGGGCCCAAAAGTTTACTACAAGACCACCAATGATAATGCTTGTTTTTCTGTTTTTTATTTATTTATTTTTTAAATTAAATGCTGCTGAGAATTTCTCTTACCCAAGCATTTTTTAAATATTTTTAAAAATGTAATTATATATATTATACACACACAGGTTTGTTTTGCTATCTTTGTGATGACTCTCCATAGACGTAATGGTTTTTATACTGTACAAACTGTATATTCTATCCCCCTACATTACCCCTACTCCTAAACCTACCCATCACAGAAAACATTGTACATTTTTACATTTTTAATAAAACATTGTTTAGTAGGCTATGTTTTTAAAGCTATTTTAAATATGAGGACTCATGAAATGTCCTCATATTTCATGTTTACGTCGTAATACCAGTGTAATACCCATGTCATACAAATTTGTGTCCTCATAAATCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74029 lncRNA downstream 1689 6495479 ~ 6495945 (-) True G65046
TU74028 lncRNA downstream 2554 6494438 ~ 6495080 (-) True G65045
TU74024 lncRNA downstream 58552 6438865 ~ 6439082 (-) True G65041
TU74023 lncRNA downstream 67245 6430189 ~ 6430389 (-) True G65040
TU74022 lncRNA downstream 67875 6429543 ~ 6429759 (-) True G65039
TU73951 lncRNA upstream 28603 6547764 ~ 6728491 (-) True G64969
TU74076 lncRNA upstream 128371 6647532 ~ 6648170 (-) True G65082
TU73964 lncRNA upstream 210397 6729558 ~ 6735582 (-) True G64981
TU74098 lncRNA upstream 222583 6741744 ~ 6804348 (-) True G65102
TU74127 lncRNA upstream 426018 6945179 ~ 6945596 (-) True G65131
CI01000010_06456276_06481282.mRNA mRNA downstream 16207 6456276 ~ 6481427 (-) True CI01000010_06456276_06481282
CI01000010_06253230_06263855.mRNA mRNA downstream 233779 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
CI01000010_06180084_06216445.mRNA mRNA downstream 281189 6180084 ~ 6216445 (-) True CI01000010_06180084_06216445
CI01000010_06107283_06108881.mRNA mRNA downstream 388645 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06083696_06089271.mRNA mRNA downstream 408060 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_06588155_06615737.mRNA mRNA upstream 68059 6587220 ~ 6615737 (-) True CI01000010_06588155_06615737
CI01000010_06625010_06627729.mRNA mRNA upstream 105029 6624190 ~ 6627729 (-) True CI01000010_06625010_06627729
CI01000010_06639960_06641129.mRNA mRNA upstream 120419 6639580 ~ 6641139 (-) True CI01000010_06639960_06641129
CI01000010_06681043_06685375.mRNA mRNA upstream 161602 6680763 ~ 6685375 (-) True CI01000010_06681043_06685375
CI01000010_06690142_06698430.mRNA mRNA upstream 170834 6689995 ~ 6698542 (-) True CI01000010_06690142_06698430
TU73887 other downstream 401154 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 580623 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 1254708 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1884078 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 2261218 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 1144530 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1323475 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2122529 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5409800 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5445704 11968202 ~ 11968254 (-) True G67957

Expression Profile