RNA id: TU74024


Basic Information

Item Value
RNA id TU74024
length 218
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G65041
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6438865 ~ 6439082 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACTTTTGTAAGGGATGCAATGCTACTTGCACATATGTGCACCTTTTGACATGACCGACCTGAGTCTGAATCCATCTTTTCCTTCAACCAAAACCAATGTCACACCCTGCTAAACAGTTTAGAGAGAAGAGCTGAATTCAATATGGAGGAGTGAAATAAAGATTTGTGCATTTAATCTCATGAACTATTATTGTAATGGAATAATAAACCTGCTTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74023 lncRNA downstream 8476 6430189 ~ 6430389 (-) True G65040
TU74022 lncRNA downstream 9106 6429543 ~ 6429759 (-) True G65039
TU74021 lncRNA downstream 9482 6429081 ~ 6429383 (-) True G65038
TU73976 lncRNA downstream 113047 6266792 ~ 6325818 (-) True G64993
TU73925 lncRNA downstream 225855 6212792 ~ 6213010 (-) True G64953
TU74028 lncRNA upstream 55356 6494438 ~ 6495080 (-) True G65045
TU74029 lncRNA upstream 56397 6495479 ~ 6495945 (-) True G65046
TU74038 lncRNA upstream 57777 6496859 ~ 6532656 (-) False G65047
TU74032 lncRNA upstream 58552 6497634 ~ 6500154 (-) False G65047
TU74033 lncRNA upstream 58552 6497634 ~ 6519161 (-) True G65047
CI01000010_06253230_06263855.mRNA mRNA downstream 175010 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
CI01000010_06180084_06216445.mRNA mRNA downstream 222420 6180084 ~ 6216445 (-) True CI01000010_06180084_06216445
CI01000010_06107283_06108881.mRNA mRNA downstream 329876 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06083696_06089271.mRNA mRNA downstream 349291 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_05921406_05962819.mRNA mRNA downstream 476046 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
CI01000010_06456276_06481282.mRNA mRNA upstream 17194 6456276 ~ 6481427 (-) True CI01000010_06456276_06481282
CI01000010_06504062_06505040.mRNA mRNA upstream 64901 6503983 ~ 6505276 (-) True CI01000010_06504062_06505040
CI01000010_06588155_06615737.mRNA mRNA upstream 148138 6587220 ~ 6615737 (-) True CI01000010_06588155_06615737
CI01000010_06625010_06627729.mRNA mRNA upstream 185108 6624190 ~ 6627729 (-) True CI01000010_06625010_06627729
CI01000010_06639960_06641129.mRNA mRNA upstream 200498 6639580 ~ 6641139 (-) True CI01000010_06639960_06641129
TU73887 other downstream 342385 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 521854 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 1195939 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1825309 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 2202449 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 1224609 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1403554 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2202608 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5489879 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5525783 11968202 ~ 11968254 (-) True G67957

Expression Profile