RNA id: TU73925


Basic Information

Item Value
RNA id TU73925
length 219
lncRNA type intronic
GC content 0.52
exon number 1
gene id G64953
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6212792 ~ 6213010 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAAGCGAGAAGCGTCACGTCTTGCGTATGCTTCCACGCGCCAGCCTGGTAAATATCGACCGCGAGGATTATACAGACACCTCTGGGCTTTTAAAAGGTGTGCGAGTCAGAGTTGATGGACGTGTATGCGTACGCCCACCCCTCAGACGTACACCCTTATGCTAGTACGTGGGTGTGCAGGCATTAAAAGAGCGCTCTCCTTTTGTCCTTTTACACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73924 lncRNA downstream 192 6212285 ~ 6212600 (-) True G64952
TU73923 lncRNA downstream 740 6211357 ~ 6212052 (-) True G64951
TU73921 lncRNA downstream 3251 6207640 ~ 6209541 (-) False G64950
TU73922 lncRNA downstream 3251 6207640 ~ 6209541 (-) True G64950
TU73920 lncRNA downstream 5757 6206671 ~ 6207035 (-) True G64949
TU73976 lncRNA upstream 53782 6266792 ~ 6325818 (-) True G64993
TU74021 lncRNA upstream 216071 6429081 ~ 6429383 (-) True G65038
TU74022 lncRNA upstream 216533 6429543 ~ 6429759 (-) True G65039
TU74023 lncRNA upstream 217179 6430189 ~ 6430389 (-) True G65040
TU74024 lncRNA upstream 225855 6438865 ~ 6439082 (-) True G65041
CI01000010_06107283_06108881.mRNA mRNA downstream 103803 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06083696_06089271.mRNA mRNA downstream 123218 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_05921406_05962819.mRNA mRNA downstream 249973 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
CI01000010_05743309_05757933.mRNA mRNA downstream 454859 5743309 ~ 5757933 (-) True CI01000010_05743309_05757933
CI01000010_05734012_05743267.mRNA mRNA downstream 469293 5733797 ~ 5743499 (-) True CI01000010_05734012_05743267
CI01000010_06253230_06263855.mRNA mRNA upstream 39356 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
CI01000010_06456276_06481282.mRNA mRNA upstream 243266 6456276 ~ 6481427 (-) True CI01000010_06456276_06481282
CI01000010_06504062_06505040.mRNA mRNA upstream 290973 6503983 ~ 6505276 (-) True CI01000010_06504062_06505040
CI01000010_06588155_06615737.mRNA mRNA upstream 374210 6587220 ~ 6615737 (-) True CI01000010_06588155_06615737
CI01000010_06625010_06627729.mRNA mRNA upstream 411180 6624190 ~ 6627729 (-) True CI01000010_06625010_06627729
TU73887 other downstream 116312 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 295781 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 969866 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1599236 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1976376 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 1450681 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1629626 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2428680 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5715951 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5751855 11968202 ~ 11968254 (-) True G67957

Expression Profile