RNA id: CI01000015_00790715_00793401.mRNA


Basic Information

Item Value
RNA id CI01000015_00790715_00793401.mRNA
length 2135
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000015_00790715_00793401
representative True

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 790440 ~ 794661 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAGCATGATTCAACCACTAAATGTTAAATTCAGAAAATCACACTTGGTCGCAGAAAATTACTTTTTGTCGTCGACTTTGGTTAAAGTGAGTGAGTGGATGTTGTGGAACTACTGTAGCTCTTCTCGTTTGTTTCACTCGGACTGTATTGAGATGCGCGCACAGCTGATCATGTGATTGTAATTCAGGAGAAGCTTCACTAAACATCTTTTGATTTACAAATATAACCTGAAGCTTTATTTTGTGTGATGATATATTAAAAGCGTCATAAAATGCTGTTAGTTTTATCTGAGGAACACAAGGAACATTTAGGATTCTTATCAGAAGTGGATCCTGCGGTTGTTGGAGAATTTGGCCGAATTGCTGTGGAGTTTCTGAAAAAGGGCTCAAACCCTAAAATATATGAGGGAGCGGCACGGAAGCTGAATGTGCCATCAGAGAGCATCCAGCATGGCGTGGAGGGTTTGATGTATCTCCTCACCGAGAGCTCCAAACTTATGATTTCAGAGGTGGATTTCCAGGACTCCGTGCTGGTGTTGGGATTCTCAGAGGAGCTCAATCAACTTCTTCTCCAGCTGTATTTGGAGAACAGGAAGGAGATCCGACAGATTCTCAGCAAACTCGCCCCCAGCCTCCCCCATTACCACAACCTGGAGTGGAGGCTCGATGTTCATTTGGCCAGTCGGGCTCTTCGCCATCAAGTGAAGCCCACCGTGACCCTGAAGCTGCACCTTGAGGACGGAGCGAGACACAGTTCCCACGTGCTGCAGACGGATCCCGCCACGCTGCAGCACCTTATTCAAGAGCTGGAACGAGCGCTCGCCGAGCTCAAGAGCAACCACTGCCGCCGCATACTCCGCAACATCAAATAGTGCCGTGCTGACAGCTTCAGCTGCCATCATGTCCGGCAACACTAATGAACTGCACAGAAAGGGTTTGTTTGATTCTGATGACTTTAACAACAACAAGATATTCTTCAACTATGATGTTTGATACGAGGAAGGGCATTTAATCCTGATTACAGCTGTTTGCATAAATCTTCACAGTTTTAATTTGACCTTAAAGGGGTTAGTTCACCCAAAAATGACAATTCTGTCATCAGTTACTCATGTCGTTCCAAACTCATGATACTTTCGTTCATCATTGGAACACAAATGAAGATATTTTAATGAAATCTGAGAGATTTCTGTCCCTTAATTGAAAATCAATTCACTCAAAATGTTCATAAAGAGATTGTAAACTAAAACCATATGAATGGAATGCATATAATCCAAATCTTCTGAAGAGACATGGTCGCTTATATGATGAACAGATTTAATTTAGGCTTTTCATCATATAAAGCGATCGTGTTGCTTCAGAAGACTTGGACTAAACCACTCGATACATATGGATTTGTTTTACGATCAATCTTTATGAATATTTTGAAGCGTCAGAGTTGACTGTCAACAGAGGGACAGTAATCCCTCAGATTTAATTTAAAATATCTTCATCTGTATTTCGAAGAAGAACGAAAGTTGGTTTTGGAATGACATGAGGGTGAGTAATTGATGACAGTTTTCATTTCTGAGTTAACTCACCCTTTAAAGCAGTGATGCTCCACTGGCCCTACAGTTGTTTCTTAGAGAAGAATCAATGCTGATTTGATAGTTTCATTTGTGCCATAAGTATTAACGGATGACTTTGCATTTATTATAAGTATGTACACAAGGAATGGAAGGGTTTATCGTGTGTATTTCTGGGCAAGGTGTTTACATTCCCAGCAATATATGGACATTTCGGACCAATTTTACTGAATGTCATATTGATCAGTTATTGCACTTTTTCTTGAGTGTCCATAATGTAGAGTAATGATCAGGCTGAATCTGCACTGTTTTTAGCATTTTCTGCACTTGGGCATCTACAGAATTCTGCACAAAGAATGAGGAAAAAATGTGTTAAATGGAACTGAGAGCTCCACACTTTTATCTGTAAATGCCGGATGTCTTCATTCTTGTGCTCGCAGAGTCAGTGTGGGCCTGGTAATAAGAACAAGATGAACATTAAACTGCCTTTTTCCTCAATACGCATTGCACTGTTAACATTTGAACTGTTTTCACAGATGTGTTTTTAGTTGTTTTTCATCAGTTCCTGTA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98992 lncRNA upstream 133714 656227 ~ 656726 (+) True G86933
TU98991 lncRNA upstream 134293 655932 ~ 656147 (+) True G86932
TU98990 lncRNA upstream 134518 655318 ~ 655922 (+) True G86931
TU98962 lncRNA upstream 198843 590779 ~ 591597 (+) False G86908
TU99348 lncRNA downstream 206580 1001241 ~ 1001459 (+) True G87246
TU99350 lncRNA downstream 213842 1008503 ~ 1008777 (+) True CI01000015_01002365_01011214
TU99351 lncRNA downstream 214711 1009372 ~ 1009607 (+) True G87249
TU99355 lncRNA downstream 218923 1013584 ~ 1013801 (+) True G87253
TU99303 lncRNA downstream 221214 1016228 ~ 1016275 (+) False G87214
CI01000015_00749679_00758875.mRNA mRNA upstream 31143 749381 ~ 759297 (+) True CI01000015_00749679_00758875
CI01000015_00690873_00738349.mRNA mRNA upstream 50724 690478 ~ 739716 (+) True CI01000015_00690873_00738349
CI01000015_00677822_00681741.mRNA mRNA upstream 108634 677755 ~ 681806 (+) True CI01000015_00677822_00681741
CI01000015_00670047_00675766.mRNA mRNA upstream 114458 669599 ~ 675982 (+) True CI01000015_00670047_00675766
CI01000015_00625163_00648377.mRNA mRNA upstream 141461 625163 ~ 648979 (+) True CI01000015_00625163_00648377
CI01000015_00800582_00853181.mRNA mRNA downstream 5921 800582 ~ 853181 (+) True CI01000015_00800582_00853181
CI01000015_00886425_00888351.mRNA mRNA downstream 90570 885231 ~ 888806 (+) True CI01000015_00886425_00888351
CI01000015_00890625_00902801.mRNA mRNA downstream 95964 890625 ~ 902996 (+) True CI01000015_00890625_00902801
CI01000015_00970175_00973727.mRNA mRNA downstream 175514 970175 ~ 973740 (+) True CI01000015_00970175_00973727
CI01000015_01002365_01011214.mRNA mRNA downstream 207704 1002365 ~ 1011275 (+) False CI01000015_01002365_01011214
TU99556 other downstream 816422 1611083 ~ 1611387 (+) True G87432
TU100157 other downstream 1081343 1876004 ~ 1876594 (+) True G87972
TU100381 other downstream 1589355 2384016 ~ 2500594 (+) False G88172
TU100556 other downstream 1717437 2512970 ~ 2513011 (+) True G88328
TU100954 other downstream 2228335 3026680 ~ 3030290 (+) False G88670

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040792 True 914 mRNA 0.48 5 NC_007133.7 38037530 ~ 38045244 (+)