RNA id: CI01000015_00800582_00853181.mRNA


Basic Information

Item Value
RNA id CI01000015_00800582_00853181.mRNA
length 1185
RNA type mRNA
GC content 0.59
exon number 6
gene id CI01000015_00800582_00853181
representative True

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 800582 ~ 853181 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGCAGTAACCCTCTCCAGCCGTTACCGGGCCAGCAGGTGATCCATGTCGCCAAAGACCTTGACACGGATCTGGAGGCTCTTTTCAACTCCGTCATGAGCCCAAAGCCCAGCTCCTGGAGGAACAAACATCTGCCCGAGTCGTTTTTTAAGGAGCCGGACTCGGGCTCTCACTCTCGGCAGTCCAGCACGGATTCCGGCAGCCACCCGCCGCGGCTCCAGGCGCAGCACGTCCGCTCGCACTCGTCCCCGGCGTCCCTGCAGCTGCCCGCGGGCGCGCTGGGCGCCCCGAACCCCGCTCGCCATCACTCTCATATCCGACACCAGTCGTTCGATGTGGCCGAGGAGCTGCCTTTACCCCCGGGTTGGGAGATGGCCTACACTCCCAACGGACAGAAGTACTTTCTCAATCACATTGAGAAGATCACCACATGGCATGACCCCAGGAAGAACATGGCACCCTCAGTGACCCAGATGGGTCTGCACAATCAAGCCTCCAACAACGCCAACATACAGCAGCGCACCATGGCCCTCTCTCAACCCAACCTAGGTGAGTGTGAAAGCCGTCCCTCCCAGCAGTCCACATTTCGCATTACTCATGAAAACACGCAAGTTCAGGGCTCCCAGCCGCAGAACTCTCAGCCCATGATGAACATGAGCGGCCCCATGAGTGCCCAGCAGCACCAGCAGAAAATGAGGCTCCAGCGCATCCAGATGGAGCGAGAGCGCATCCAGAGGAGACAGGAAGAGCTCATGAGACAGGAGGTGGCGCTCCGACAGCTGCCCATGGACTCTGAAAATATGGCACCTGTGGCACCAGCCATCAGCTCTCCGGCCATGACGCAGGGCAACATGCCCAACAACAGCTCAGATCCCTTCCTCAACAGGCAGGTTGGGCCGTATCACTCACGAGAGCAGAGCACGGACAGCGGACTCGGACTGGGCTGTTACAGCATCCCCACCACTCCCGAGGACTTCCTGAACAACATGGAGGAGATGGACACAGGTGAGAACATGGTGCCTGTCAGTATGAACGTACCCCAGCAGAGCCGTTTCCCAGACTTCCTGGACTCCATGCCCGGCACCAATGTGGACTTGGGCACCCTGGAGGGCGCCGACCTCATGCCCATCCTCAATGACGTGGAATCGGTTCTGAACAAGAGTGAACCCTTCCTCACCTGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98992 lncRNA upstream 143856 656227 ~ 656726 (+) True G86933
TU98991 lncRNA upstream 144435 655932 ~ 656147 (+) True G86932
TU98990 lncRNA upstream 144660 655318 ~ 655922 (+) True G86931
TU98962 lncRNA upstream 208985 590779 ~ 591597 (+) False G86908
TU99348 lncRNA downstream 148060 1001241 ~ 1001459 (+) True G87246
TU99350 lncRNA downstream 155322 1008503 ~ 1008777 (+) True CI01000015_01002365_01011214
TU99351 lncRNA downstream 156191 1009372 ~ 1009607 (+) True G87249
TU99355 lncRNA downstream 160403 1013584 ~ 1013801 (+) True G87253
TU99303 lncRNA downstream 162694 1016228 ~ 1016275 (+) False G87214
CI01000015_00790715_00793401.mRNA mRNA upstream 5921 790440 ~ 794661 (+) True CI01000015_00790715_00793401
CI01000015_00749679_00758875.mRNA mRNA upstream 41285 749381 ~ 759297 (+) True CI01000015_00749679_00758875
CI01000015_00690873_00738349.mRNA mRNA upstream 60866 690478 ~ 739716 (+) True CI01000015_00690873_00738349
CI01000015_00677822_00681741.mRNA mRNA upstream 118776 677755 ~ 681806 (+) True CI01000015_00677822_00681741
CI01000015_00670047_00675766.mRNA mRNA upstream 124600 669599 ~ 675982 (+) True CI01000015_00670047_00675766
CI01000015_00886425_00888351.mRNA mRNA downstream 32050 885231 ~ 888806 (+) True CI01000015_00886425_00888351
CI01000015_00890625_00902801.mRNA mRNA downstream 37444 890625 ~ 902996 (+) True CI01000015_00890625_00902801
CI01000015_00970175_00973727.mRNA mRNA downstream 116994 970175 ~ 973740 (+) True CI01000015_00970175_00973727
CI01000015_01002365_01011214.mRNA mRNA downstream 149184 1002365 ~ 1011275 (+) False CI01000015_01002365_01011214
CI01000015_01015968_01016675.mRNA mRNA downstream 162442 1015623 ~ 1016846 (+) False CI01000015_01015968_01016675
TU99556 other downstream 757902 1611083 ~ 1611387 (+) True G87432
TU100157 other downstream 1022823 1876004 ~ 1876594 (+) True G87972
TU100381 other downstream 1530835 2384016 ~ 2500594 (+) False G88172
TU100556 other downstream 1658917 2512970 ~ 2513011 (+) True G88328
TU100954 other downstream 2169815 3026680 ~ 3030290 (+) False G88670

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040793 True 1782 mRNA 0.55 6 NC_007133.7 38049130 ~ 38114599 (+)