RNA id: TU144892



Basic Information


Item Value
RNA id TU144892
length 2630
lncRNA type read_through
GC content 0.39
exon number 7
gene id G127519
representative False

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2393683 ~ 2427006 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATGGCTTGCTATTTCAAAGTCAAGTAGCCATAAAGAAAATATAAACAGCTTCCAGATGCGCAGAGCACTGAAGTGCATTGTAAATATCAGTTTGTCAAATTATTTCATCTAGTTGCGCATTTTTTTTTTTTTTTTTTTTTTATTTTATGGTCGTATATGGTTGCTTTTATTATAAAAGGAAACAATTTTAATAAACAATCTTCAAGAAAATATGACCTTCGACAATAAATAAATATAAATACTGTAAAATACCACTTTAAAAAAAATATAAGCACATTAAACATCAGATGAAACAAGCATAGAAATTAATACAATCTTCAAATTGTTAGTGCATGTAGAACTTCTGTCTGCTGAGGCTTTAAATTCATGTCCTTTAAATGATGTCCTTGATGTTTCAGACAGTAATGCTTTCTTTTAATAGTCTAGATCTTTCCCCCACAATAGCAGAGATAACATACTGAATAACCTTGTTTACACGTTTCTTATTAAAGTTTGGCACTCCAAGCTATGCTCAAATGGTAGATATAGAAGGTTTTGCATTCCTCCCCCCACTTCATTTTAAAACAGATCTCTTGTCTTCAGTAGTATGTTGTGTGCAGACTTTTTGGCGTTTTCTTTGGTCCTTCTGCGTGTATGGTTACTTCAGGCACAACCTTGGTCTGTTAGTATTCCTGAGGCTGGTTAACTTGACCGCTGAACAACAACGCACCTTGGGTTTGTGCTGAATGAGGAAGTAGAACGGTCTATCCAGTGTGATCTCCTCGACAGCCATGCGAGAGTAGATGATAGCCGCTGTGGAACCACAGAATAATGTCAAAGATGCATTTTGGTATCGCTATGATGATTGTTAATGCTATTAAATCTTTGTTGTGGTAGGTTGTAATTTAGTGATTGTACCTGTGGCAGATGAGCCTTTGGTTCCTTCTTCATTCACCTCAAGTTTTACTCTCTGAAGGACCTTGGATACACATAAAGGTTCCTCAGCTAGGTGGACAGAACAGAGATAGAGAAACAACTATATTAGATTAATCCATTAACATTTATTCCTTAACAAAACAGCTACATAGTTGCCAAAAATAAAAACTGATCATTTCCAATACTCACTGGTAATGCGAGAGAAATCAGCTTTGCTCTGGCTGAAAATATCTCCAAGACCCATCTTGCTCAGTGTAGACTTCAAATCAATTTCTGTATCCATAGAGACTTGGAATAGCCAGTTGTTTGCTAATCTTTCTCATCTCTTTTCTCCATTGGTGAATCCTGCTGCTGCTTAGCTCTTTGATCAAGGCCATCAGAGGCACATCCTTCTCAAATGGTGTCACCAGAAGCATACTTAGTGACTCCCCCTCATAAGGCACCTCAATGACATCGTAGTCCACACCATCCTCAGTCACAAACTCAGTAGTTTAATTTTTGAGTTGTTGTCATCATGGGAACAGATACAGCACTGCCGTTGGCTCTGTGGAAGAGCTGTTCCCTAGTAAGTGTAGGGTCGAACGGTGTCTTCCAGATCCCATGGAAGTGGATGGCATTTAACAGGACTAAACGTGTCTGTTCACTCAGCACTCCAGATGGGAGGAATTCAGAAACTTACCACCAGTGTGGTCAGATGTCCAGGAGTTGATCACCTGCCTGGCCATCTCTGGGTGGCTAAAGTCAATTTGGTGTGGGACACTCTGGAAGGCTTTGGTCAGGCTGCGTCTAAAGATCTTTTCCAAAATTATCTTCCTGTCGACCATGACACCGCTGGCCACTTCCACTCCATCTTCACTGGCCAAATCTCTCTGAAGAAGCTTCTGTTGCTTTGGCATTCCTCGTGCTATGCAGTGAGTATCCCATCTTGGAGGTGAGCATTTCAAGTGTGCTGCCATAGGCACCCAGCTGAGCCATACCCAGCACTGAGGAGATGCCATAGGGAGAGAGAGCCAGATTTCTGTCCGGAGCAGACTGAATGGCTTCAGAGAACACTTGAAGTCCAAAATCTGTATGTTTCTCTTGAAAAAGGTTGCACAAGCTTGACCCGCAAAGGGTAAAGATCAGCAATATACTCAGGCTCTGCATTCTGAATAAGTGAGGAAGAGGAGAGAAATGTCAGCGGTGTTAATTTGAAATTGTAAATGCTTGGTAAAGATAGTTTAAAGAGCTTATTTTTTTTCTCAAGTATGTTTCTGGTCCCAATATGTGTGTTCACTCGGAAAAACCACGGAGAAATGTTCACTTTCCCTTGTAAAAATTCTCTCTCATGTGCAAGACAACAACACCCACTGTTCAAACGCAATACCATGCTATTACTGTTTGTCTGTCTTGACTCAAAATCAATACATAAGAACCTTTGTCTACAACAGTTCACTCATAACTAATAATTACACAACTAATAATTAAATTAAGTTTCAAATTTCACAATCTAATTCTGTTTTTTCCCATGCTGTTCAGACCAAAACATGTGGGCATAATCTATTGTTACTAACAACGAAAATAGTTTGAAACTTTATCGGTTACAGGCAGAAACTTTATCGGCTATAGGCAGAACAAGATTATACAATTACCTGAAAGATGCTTTATTTTTGTAGAGTTTCTTTGTAGATTTAGCGTGTTATTGTGATCCTCCAATGCAGTGCAAGCCCAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU144980 lncRNA upstream 6100 2387323 ~ 2387583 (+) True G127597
TU144976 lncRNA upstream 10342 2383091 ~ 2383341 (+) True G127593
TU144974 lncRNA upstream 11730 2381617 ~ 2381953 (+) True G127591
TU144955 lncRNA upstream 93848 2299273 ~ 2299835 (+) True G127574
TU144948 lncRNA upstream 111325 2282131 ~ 2282358 (+) True G127567
TU144991 lncRNA downstream 11068 2438074 ~ 2438370 (+) True G127608
TU144992 lncRNA downstream 11388 2438394 ~ 2438730 (+) True G127609
TU144993 lncRNA downstream 11879 2438885 ~ 2439176 (+) True G127610
TU144997 lncRNA downstream 17811 2444817 ~ 2445051 (+) True G127614
TU145012 lncRNA downstream 87225 2514231 ~ 2583751 (+) False G127623
CI01000026_02351177_02371429.mRNA mRNA upstream 21865 2351104 ~ 2371818 (+) True CI01000026_02351177_02371429
CI01000026_02332785_02336722.mRNA mRNA upstream 56737 2332203 ~ 2336946 (+) True CI01000026_02332785_02336722
CI01000026_02318608_02319349.mRNA mRNA upstream 73809 2318608 ~ 2319874 (+) True CI01000026_02318608_02319349
CI01000026_02249557_02256584.mRNA mRNA upstream 136697 2247478 ~ 2256986 (+) True CI01000026_02249557_02256584
CI01000026_02230639_02246622.mRNA mRNA upstream 146588 2230175 ~ 2247095 (+) True CI01000026_02230639_02246622
CI01000026_02476591_02498283.mRNA mRNA downstream 49585 2476591 ~ 2498501 (+) True CI01000026_02476591_02498283
CI01000026_02559910_02563125.mRNA mRNA downstream 132837 2559843 ~ 2563679 (+) True CI01000026_02559910_02563125
CI01000026_02602796_02611957.mRNA mRNA downstream 175790 2602796 ~ 2612380 (+) True CI01000026_02602796_02611957
CI01000026_02650632_02651292.mRNA mRNA downstream 223626 2650632 ~ 2651507 (+) True CI01000026_02650632_02651292
CI01000026_02659356_02660297.mRNA mRNA downstream 231599 2658605 ~ 2660653 (+) False CI01000026_02659356_02660297
TU144910 other upstream 81548 2309322 ~ 2312135 (+) True G127531
TU144867 other upstream 447244 1931183 ~ 1946439 (+) True G127500
TU143767 other upstream 1615886 776757 ~ 777797 (+) True CI01000026_00776867_00777588
TU143752 other upstream 1638520 754791 ~ 755163 (+) False G126556
TU145006 other downstream 232209 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU145397 other downstream 1325545 3752551 ~ 3762986 (+) True G127979
TU145592 other downstream 1860867 4287873 ~ 4318645 (+) True G128133
TU145596 other downstream 2003556 4430562 ~ 4431201 (+) True G128137
TU145659 other downstream 2128770 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964

Expression Profile